mSystems (Dec 2021)
AI4AMP: an Antimicrobial Peptide Predictor Using Physicochemical Property-Based Encoding Method and Deep Learning
Abstract
ABSTRACT Antimicrobial peptides (AMPs) are innate immune components that have recently stimulated considerable interest among drug developers due to their potential as antibiotic substitutes. AMPs are notable for their fundamental properties of microbial membrane structural interference and the biomedical applications of killing or suppressing microbes. New AMP candidates must be developed to oppose antibiotic resistance. However, the discovery of novel AMPs through wet-lab screening approaches is inefficient and expensive. The prediction model investigated in this study may help accelerate this process. We collected both the up-to-date AMP data set and unbiased negatives based on which the protein-encoding methods and deep learning model for AMPs were investigated. The external testing results indicated that our trained model achieved 90% precision, outperforming current methods. We implemented our model on a user-friendly web server, AI4AMP, to accurately predict the antimicrobial potential of a given protein sequence and perform proteome screening. IMPORTANCE Antimicrobial peptides (AMPs) are innate immune components that have aroused a great deal of interest among drug developers recently, as they may become a substitute for antibiotics. New candidates need to fight antibiotic resistance, while discovering novel AMPs through wet-lab screening approaches is inefficient and expensive. To accelerate the discovery of new AMPs, we both collected the up-to-date antimicrobial peptide data set and integrated the protein-encoding methods with a deep learning model. The trained model outperforms the current methods and is implemented into a user-friendly web server, AI4AMP, to accurately predict the antimicrobial properties of a given protein sequence and perform proteome screening. Author Video: An author video summary of this article is available.
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