Prediction of white spot disease susceptibility in shrimps using decision trees based machine learning models

Abstract

Abstract Recently, the spread of white spot disease in shrimps has a major impact on the aquaculture activity worldwide affecting the economy of the countries, especially South-East Asian countries like Vietnam. This deadly disease in shrimps is caused by the White Spot Syndrome Virus (WSSV). Researchers are trying to understand the spread and control of this disease by doing field and laboratory studies considering effect of environmental conditions on shrimps affected by WSSV. Generally, they have not considered spatial factors in their study. Therefore, in the present study, we have used spatial (distances to roads and factories) as well as physio-chemical factors of water: Chemical Oxygen Demand (COD), Dissolved Oxygen (DO), Salinity, NO3, P3O4 and pH, for developing WSSV susceptibility maps of the area using Decision Tree (DT)-based Machine Learning (ML) models namely Random Tree (RT), Extra Tree (ET), and J48. Model’s performance was evaluated using standard statistical measures including Area Under the Curve (AUC). The results indicated that ET model has the highest accuracy (AUC: 0.713) in predicting disease susceptibility in comparison to other two models (RT: 0.701 and J48: 0.641). The WSSV susceptibility maps developed by the ML technique, using DT (ET) method, will help decision makers in better planning and control of spatial spread of WSSV disease in shrimps.

Keywords

• White spot
• Random tree
• Extra tree
• J48
• Disease
• Vietnam