SaFiDe: Detection of saccade and fixation periods based on eye-movement attributes from video-oculography, scleral coil or electrooculography data
Samuel Madariaga,
Cecilia Babul,
José Ignacio Egaña,
Iván Rubio-Venegas,
Gamze Güney,
Miguel Concha-Miranda,
Pedro E Maldonado,
Christ Devia
Affiliations
Samuel Madariaga
Departamento de Neurociencia, Facultad de Medicina, Universidad de Chile, Chile; Centro Nacional de Inteligencia Artificial, CENIA, Chile
Cecilia Babul
Departamento de Neurociencia, Facultad de Medicina, Universidad de Chile, Chile; Biomedical Neuroscience Institute, BNI, Universidad de Chile, Chile
José Ignacio Egaña
Departamento de Anestesiología y Medicina Perioperatoria, Facultad de Medicina, Universidad de Chile, Chile
Iván Rubio-Venegas
Departamento de Neurociencia, Facultad de Medicina, Universidad de Chile, Chile
Gamze Güney
Charité-Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany; Humboldt-Universität zu Berlin, Institut für Biologie, 10099 Berlin, Germany
Miguel Concha-Miranda
Departamento de Neurociencia, Facultad de Medicina, Universidad de Chile, Chile; Bernstein Center for Computational Neuroscience Berlin, Humboldt-Universität zu Berlin, 10115 Berlin, Germany
Pedro E Maldonado
Departamento de Neurociencia, Facultad de Medicina, Universidad de Chile, Chile; Centro Nacional de Inteligencia Artificial, CENIA, Chile; Biomedical Neuroscience Institute, BNI, Universidad de Chile, Chile
Christ Devia
Departamento de Neurociencia, Facultad de Medicina, Universidad de Chile, Chile; Centro Nacional de Inteligencia Artificial, CENIA, Chile; Biomedical Neuroscience Institute, BNI, Universidad de Chile, Chile; Corresponding author at: Centro Nacional de Inteligencia Artificial, CENIA, Chile.
In this work we present SaFiDe, a deterministic method to detect eye movements (saccades and fixations) from eye-trace data. We developed this method for human and nonhuman primate data from video- and coil-recorded eye traces and further applied the algorithm to eye traces computed from electrooculograms. All the data analyzed were from free-exploration paradigms, where the main challenge was to detect periods of saccades and fixations that were uncued by the task. The method uses velocity and acceleration thresholds, calculated from the eye trace, to detect saccade and fixation periods. We show that our fully deterministic method detects saccades and fixations from eye traces during free visual exploration. The algorithm was implemented in MATLAB, and the code is publicly available on a GitHub repository. • The algorithm presented is entirely deterministic, simplifying the comparison between subjects and tasks. • Thus far, the algorithm presented can operate over video-based eye tracker data, human electrooculogram records, or monkey scleral eye coil data.