BioTechniques (Dec 1996)

Approaches to Detection of Distantly Related Proteins by Database Searches

  • K. Cattell,
  • B. Koop,
  • R.S. Olafson,
  • M. Fellows,
  • I. Bailey,
  • R.W. Olafson,
  • C. Upton

DOI
https://doi.org/10.2144/96216bc03
Journal volume & issue
Vol. 21, no. 6
pp. 1118 – 1125

Abstract

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The searching of protein databases as a method of identifying newly sequenced genes is commonplace in molecular biology laboratories. However, it is a procedure that is not usually formally taught to students, and method cookbooks discuss it only briefly. This article uses a single family of highly diverged uracil-DNA glycosylases, which fall into two distinct groups, to highlight some of the difficulties associated with identification of such proteins by database searching.