mSystems (Jun 2021)

DOE JGI Metagenome Workflow

  • Alicia Clum,
  • Marcel Huntemann,
  • Brian Bushnell,
  • Brian Foster,
  • Bryce Foster,
  • Simon Roux,
  • Patrick P. Hajek,
  • Neha Varghese,
  • Supratim Mukherjee,
  • T. B. K. Reddy,
  • Chris Daum,
  • Yuko Yoshinaga,
  • Ronan O’Malley,
  • Rekha Seshadri,
  • Nikos C. Kyrpides,
  • Emiley A. Eloe-Fadrosh,
  • I-Min A. Chen,
  • Alex Copeland,
  • Natalia N. Ivanova

DOI
https://doi.org/10.1128/mSystems.00804-20
Journal volume & issue
Vol. 6, no. 3

Abstract

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The DOE JGI Metagenome Workflow is designed for processing metagenomic data sets starting from Illumina fastq files. It performs data preprocessing, error correction, assembly, structural and functional annotation, and binning.