Data sets of eQTL loci, correlation analysis, and overlapped genes among gene sets that their expression levels are closely related to genes of Vegf family
Jinglin Cui,
Jing Li,
Hang Lu,
Hong Yu,
Dongmei Wei,
Yan Jiao,
Monica M. Jablonski,
Weikuan Gu,
Hong Chen
Affiliations
Jinglin Cui
Center of Integrative Research, The First Hospital of Qiqihar City, Qiqihar, Heilongjiang 161005, PR China; Department of Orthopedic Surgery and BME-Campbell Clinic, University of Tennessee Health Science Center, Memphis, TN 38163, USA
Jing Li
Department of Orthopedic Surgery and BME-Campbell Clinic, University of Tennessee Health Science Center, Memphis, TN 38163, USA
Hang Lu
Center of Integrative Research, The First Hospital of Qiqihar City, Qiqihar, Heilongjiang 161005, PR China
Hong Yu
Center of Integrative Research, The First Hospital of Qiqihar City, Qiqihar, Heilongjiang 161005, PR China
Dongmei Wei
Center of Integrative Research, The First Hospital of Qiqihar City, Qiqihar, Heilongjiang 161005, PR China
Yan Jiao
Department of Orthopedic Surgery and BME-Campbell Clinic, University of Tennessee Health Science Center, Memphis, TN 38163, USA
Monica M. Jablonski
Department of Ophthalmology, University of Tennessee Health Science Center, Memphis, TN 38163, USA
Weikuan Gu
Department of Orthopedic Surgery and BME-Campbell Clinic, University of Tennessee Health Science Center, Memphis, TN 38163, USA; Research Service, Veterans Affairs Medical Center, 1030 Jefferson Avenue, Memphis, TN 38104, USA; Corresponding author at: Department of Orthopedic Surgery and BME-Campbell Clinic, University of Tennessee Health Science Center, 956 Court Ave, Memphis, TN 38163, USA.
Hong Chen
Center of Integrative Research, The First Hospital of Qiqihar City, Qiqihar, Heilongjiang 161005, PR China; Corresponding author at: Center of Integrative Research, The First Hospital of Qiqihar City, 30 Gongyuan Road, Qiqihar, Heilongjiang 161005, PR China
This data is generated from the analysis of similarities and differences in gene expression levels and pathways among genes (VegfA, VegfB, VegfC, and Pgf) in Vegf family using whole genome expression data generated from normal retina of eighty strains of mice. The results have been published in doi:10.1016/j.exer.2018.06.024 (Cui et al., 2018) [1]. Fig. 1 shows the expression quantitative trait loci (eQTL) that regulate the expression level of each gene in the Vegf family. The other three figure show the overlapped genes among the top 500 genes that their expression levels are most closely correlated to each of the Vegf genes. The four tables contain the information of top 50 genes that their expression levels are most closely correlated to each of the Vegf genes, and the correlation of the top 50 genes from one gene to the other genes in the Vegf family. Keywords: Vegf family, eQTL, Mouse retina, Gene relationship, Expression levels
