Exploring PSI-MI XML Collections Using DescribeX

Samavi Reza; Consens Mariano; Khatchadourian Shahan; Topaloglou Thodoros

doi:10.1515/jib-2007-70

Journal of Integrative Bioinformatics (Dec 2007)

Exploring PSI-MI XML Collections Using DescribeX

Samavi Reza,
Consens Mariano,
Khatchadourian Shahan,
Topaloglou Thodoros

Affiliations

Samavi Reza: Information Engineering Center, Department of Mechanical and Industrial Engineering, University of Toronto, Toronto, Ontario, M5S 3G8, Canada
Consens Mariano: Information Engineering Center, Department of Mechanical and Industrial Engineering, University of Toronto, Toronto, Ontario, M5S 3G8, Canada
Khatchadourian Shahan: Information Engineering Center, Department of Mechanical and Industrial Engineering, University of Toronto, Toronto, Ontario, M5S 3G8, Canada
Topaloglou Thodoros: Information Engineering Center, Department of Mechanical and Industrial Engineering, University of Toronto, Toronto, Ontario, M5S 3G8, Canada

DOI: https://doi.org/10.1515/jib-2007-70
Journal volume & issue: Vol. 4, no. 3
pp. 123 – 134

Abstract

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PSI-MI has been endorsed by the protein informatics community as a standard XML data exchange format for protein-protein interaction datasets. While many public databases support the standard, there is a degree of heterogeneity in the way the proposed XML schema is interpreted and instantiated by different data providers. Analysis of schema instantiation in large collections of XML data is a challenging task that is unsupported by existing tools.

Published in Journal of Integrative Bioinformatics

ISSN: 1613-4516 (Online)
Publisher: De Gruyter
Country of publisher: Germany
LCC subjects: Technology: Chemical technology: Biotechnology
Website: https://www.degruyter.com/view/j/jib

About the journal