Geoscientific Model Development (Jan 2020)

AtChem (version 1), an open-source box model for the Master Chemical Mechanism

  • R. Sommariva,
  • R. Sommariva,
  • S. Cox,
  • C. Martin,
  • C. Martin,
  • K. Borońska,
  • J. Young,
  • P. K. Jimack,
  • M. J. Pilling,
  • V. N. Matthaios,
  • B. S. Nelson,
  • M. J. Newland,
  • M. Panagi,
  • W. J. Bloss,
  • P. S. Monks,
  • A. R. Rickard,
  • A. R. Rickard

DOI
https://doi.org/10.5194/gmd-13-169-2020
Journal volume & issue
Vol. 13
pp. 169 – 183

Abstract

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AtChem is an open-source zero-dimensional box model for atmospheric chemistry. Any general set of chemical reactions can be used with AtChem, but the model was designed specifically for use with the Master Chemical Mechanism (MCM, http://mcm.york.ac.uk/, last access: 16 January 2020). AtChem was initially developed within the EUROCHAMP project as a web application (AtChem-online, https://atchem.leeds.ac.uk/webapp/, last access: 16 January 2020) for modelling environmental chamber experiments; it was recently upgraded and further developed into a stand-alone offline version (AtChem2), which allows the user to run complex and long simulations, such as those needed for modelling of intensive field campaigns, as well as to perform batch model runs for sensitivity studies. AtChem is installed, set up and configured using semi-automated scripts and simple text configuration files, making it easy to use even for inexperienced users. A key feature of AtChem is that it can easily be constrained to observational data which may have different timescales, thus retaining all the information contained in the observations. Implementation of a continuous integration workflow, coupled with a comprehensive suite of tests and version control software, makes the AtChem code base robust, reliable and traceable. The AtChem2 code and documentation are available at https://github.com/AtChem/ (last access: 16 January 2020) under the open-source MIT License.