Nature Communications (Apr 2021)

A prevalent and culturable microbiota links ecological balance to clinical stability of the human lung after transplantation

  • Sudip Das,
  • Eric Bernasconi,
  • Angela Koutsokera,
  • Daniel-Adrien Wurlod,
  • Vishwachi Tripathi,
  • Germán Bonilla-Rosso,
  • John-David Aubert,
  • Marie-France Derkenne,
  • Louis Mercier,
  • Céline Pattaroni,
  • Alexis Rapin,
  • Christophe von Garnier,
  • Benjamin J. Marsland,
  • Philipp Engel,
  • Laurent P. Nicod

DOI
https://doi.org/10.1038/s41467-021-22344-4
Journal volume & issue
Vol. 12, no. 1
pp. 1 – 17

Abstract

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Here, the authors combine 16 S rRNA sequencing, culture and bioinformatics to profile the microbiome in 234 serial bronchoalveolar lavage samples from 64 lung transplant recipients collected over 49-months and identify distinct compositional states, termed pneumotypes, linked to current health status, and establish a collection of primary lung bacterial isolates, LuMiCol.