G3: Genes, Genomes, Genetics (Jun 2021)

Evaluation of Bayesian alphabet and GBLUP based on different marker density for genomic prediction in Alpine Merino sheep

  • Shaohua Zhu,
  • Tingting Guo,
  • Chao Yuan,
  • Jianbin Liu,
  • Jianye Li,
  • Mei Han,
  • Hongchang Zhao,
  • Yi Wu,
  • Weibo Sun,
  • Xijun Wang,
  • Tianxiang Wang,
  • Jigang Liu,
  • Christian Keambou Tiambo,
  • Yaojing Yue,
  • Bohui Yang

DOI
https://doi.org/10.1093/g3journal/jkab206
Journal volume & issue
Vol. 11, no. 11

Abstract

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AbstractThe marker density, the heritability level of trait and the statistical models adopted are critical to the accuracy of genomic prediction (GP) or selection (GS). If the potential of GP is to be fully utilized to optimize the effect of breeding and selection, in addition to incorporating the above factors into simulated data for analysis, it is essential to incorporate these factors into real data for understanding their impact on GP accuracy, more clearly and intuitively. Herein, we studied the GP of six wool traits of sheep by two different models, including Bayesian Alphabet (BayesA, BayesB, BayesC πn