Communications Biology (Feb 2022)

PacBio long-read amplicon sequencing enables scalable high-resolution population allele typing of the complex CYP2D6 locus

  • Sarah Charnaud,
  • Jacob E. Munro,
  • Lucie Semenec,
  • Ramin Mazhari,
  • Jessica Brewster,
  • Caitlin Bourke,
  • Shazia Ruybal-Pesántez,
  • Robert James,
  • Dulcie Lautu-Gumal,
  • Harin Karunajeewa,
  • Ivo Mueller,
  • Melanie Bahlo

DOI
https://doi.org/10.1038/s42003-022-03102-8
Journal volume & issue
Vol. 5, no. 1
pp. 1 – 10

Abstract

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PLASTER is a broadly-applicable data processing pipeline that enables robust allele typing of SMRT-sequenced amplicons, as evidenced by allele typing of the CYP2D6 gene in a cohort from the Solomon Islands.