npj Biofilms and Microbiomes (Aug 2025)

Infant gut microbiota and SCFAs mediate the association between early-life human milk microbiota and neurodevelopment

  • Simou Wu,
  • Wen Jia,
  • Jinxing Li,
  • Yating Luo,
  • Fei Chen,
  • Ting Yang,
  • Xia Jiang,
  • Fang He,
  • Ruyue Cheng

DOI
https://doi.org/10.1038/s41522-025-00790-y
Journal volume & issue
Vol. 11, no. 1
pp. 1 – 13

Abstract

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Abstract Human milk microbiota (HMM) plays a key role in infant gut microbiota (IGM) establishment, however, the influence of the early life HMM in later neurodevelopment remains unclear. In this mother-infant cohort, we investigated HMM development and its impact on IGM-neurodevelopment crosstalk. Breast milk and infant feces were collected on days 0, 7, and 30 for sequencing and SCFAs quantification, while neurodevelopment was assessed via ASQ-3 at 12 months. HMM remained stable during the first month, while IGM fluctuated significantly within the first 7 days. Songbird and mediation analyses revealed strengthening associations between HMM, IGM, and neurodevelopment over time. IGM served as a key mediator linking HMM to neurodevelopment, with SCFAs playing a mediating role in the connection between IGM and neurodevelopment on day 30. Our findings suggest that early-life stable and unique HMM may influence long-term neurodevelopment by dynamically modulating IGM and SCFAs, highlighting a potential strategy to prevent neurodysplasia by monitoring mother-infant microecology.