BMC Bioinformatics (Jul 2006)

Curation of complex, context-dependent immunological data

  • Sidney John,
  • Chan Russell K,
  • de Castro Romulo,
  • Ponomarenko Julia,
  • Bourne Philip E,
  • Bui Huynh-Hoa,
  • Mokili John,
  • Sathiamurthy Muthu,
  • Grey Howard,
  • Fleri Ward,
  • Salimi Nima,
  • Zarebski Laura,
  • Vaughan Kerrie,
  • Vita Randi,
  • Wilson Stephen S,
  • Stewart Scott,
  • Way Scott,
  • Peters Bjoern,
  • Sette Alessandro

DOI
https://doi.org/10.1186/1471-2105-7-341
Journal volume & issue
Vol. 7, no. 1
p. 341

Abstract

Read online

Abstract Background The Immune Epitope Database and Analysis Resource (IEDB) is dedicated to capturing, housing and analyzing complex immune epitope related data http://www.immuneepitope.org. Description To identify and extract relevant data from the scientific literature in an efficient and accurate manner, novel processes were developed for manual and semi-automated annotation. Conclusion Formalized curation strategies enable the processing of a large volume of context-dependent data, which are now available to the scientific community in an accessible and transparent format. The experiences described herein are applicable to other databases housing complex biological data and requiring a high level of curation expertise.