Genomics, Proteomics & Bioinformatics (Feb 2022)
SLM2 Is A Novel Cardiac Splicing Factor Involved in Heart Failure due to Dilated Cardiomyopathy
- Jes-Niels Boeckel,
- Maximilian Möbius-Winkler,
- Marion Müller,
- Sabine Rebs,
- Nicole Eger,
- Laura Schoppe,
- Rewati Tappu,
- Karoline E. Kokot,
- Jasmin M. Kneuer,
- Susanne Gaul,
- Diana M. Bordalo,
- Alan Lai,
- Jan Haas,
- Mahsa Ghanbari,
- Philipp Drewe-Boss,
- Martin Liss,
- Hugo A. Katus,
- Uwe Ohler,
- Michael Gotthardt,
- Ulrich Laufs,
- Katrin Streckfuss-Bömeke,
- Benjamin Meder
Affiliations
- Jes-Niels Boeckel
- Department of Cardiology, Angiology and Pneumology, University Hospital Heidelberg, D-69120 Heidelberg, Germany; Klinik und Poliklinik für Kardiologie, Universitätskrankenhaus Leipzig, D-04103 Leipzig, Germany
- Maximilian Möbius-Winkler
- Klinik und Poliklinik für Kardiologie, Universitätskrankenhaus Leipzig, D-04103 Leipzig, Germany
- Marion Müller
- Department of Cardiology, Angiology and Pneumology, University Hospital Heidelberg, D-69120 Heidelberg, Germany; German Center for Cardiovascular Research (DZHK), Partner site Heidelberg, D-69120 Heidelberg, Germany; Clinic for General and Interventional Cardiology/Angiology, Herz- und Diabeteszentrum NRW, Ruhr-Universität Bochum, D-32545 Bad Oeynhausen, Germany
- Sabine Rebs
- Department of Cardiology and Pneumology, University Hospital, Georg-August University Goettingen, D-37075 Goettingen, Germany; German Center for Cardiovascular Research (DZHK), Partner site Goettingen, D-37075 Goettingen, Germany
- Nicole Eger
- Department of Cardiology, Angiology and Pneumology, University Hospital Heidelberg, D-69120 Heidelberg, Germany
- Laura Schoppe
- Department of Cardiology, Angiology and Pneumology, University Hospital Heidelberg, D-69120 Heidelberg, Germany
- Rewati Tappu
- Department of Cardiology, Angiology and Pneumology, University Hospital Heidelberg, D-69120 Heidelberg, Germany
- Karoline E. Kokot
- Klinik und Poliklinik für Kardiologie, Universitätskrankenhaus Leipzig, D-04103 Leipzig, Germany
- Jasmin M. Kneuer
- Klinik und Poliklinik für Kardiologie, Universitätskrankenhaus Leipzig, D-04103 Leipzig, Germany
- Susanne Gaul
- Klinik und Poliklinik für Kardiologie, Universitätskrankenhaus Leipzig, D-04103 Leipzig, Germany
- Diana M. Bordalo
- Department of Cardiology, Angiology and Pneumology, University Hospital Heidelberg, D-69120 Heidelberg, Germany; German Center for Cardiovascular Research (DZHK), Partner site Heidelberg, D-69120 Heidelberg, Germany
- Alan Lai
- Department of Cardiology, Angiology and Pneumology, University Hospital Heidelberg, D-69120 Heidelberg, Germany; German Center for Cardiovascular Research (DZHK), Partner site Heidelberg, D-69120 Heidelberg, Germany
- Jan Haas
- Department of Cardiology, Angiology and Pneumology, University Hospital Heidelberg, D-69120 Heidelberg, Germany; German Center for Cardiovascular Research (DZHK), Partner site Heidelberg, D-69120 Heidelberg, Germany
- Mahsa Ghanbari
- Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, D-10115 Berlin, Germany; Institute of Biology, Humboldt Universität zu Berlin, D-10099 Berlin, Germany
- Philipp Drewe-Boss
- Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, D-10115 Berlin, Germany; Institute of Biology, Humboldt Universität zu Berlin, D-10099 Berlin, Germany
- Martin Liss
- Neuromuscular and Cardiovascular Cell Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, D-13092 Berlin, Germany; German Center for Cardiovascular Research (DZHK), Partner site Berlin, D-10117 Berlin, Germany
- Hugo A. Katus
- Department of Cardiology, Angiology and Pneumology, University Hospital Heidelberg, D-69120 Heidelberg, Germany; German Center for Cardiovascular Research (DZHK), Partner site Heidelberg, D-69120 Heidelberg, Germany
- Uwe Ohler
- Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, D-10115 Berlin, Germany; Institute of Biology, Humboldt Universität zu Berlin, D-10099 Berlin, Germany
- Michael Gotthardt
- Neuromuscular and Cardiovascular Cell Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, D-13092 Berlin, Germany; German Center for Cardiovascular Research (DZHK), Partner site Berlin, D-10117 Berlin, Germany
- Ulrich Laufs
- Klinik und Poliklinik für Kardiologie, Universitätskrankenhaus Leipzig, D-04103 Leipzig, Germany
- Katrin Streckfuss-Bömeke
- Department of Cardiology and Pneumology, University Hospital, Georg-August University Goettingen, D-37075 Goettingen, Germany; German Center for Cardiovascular Research (DZHK), Partner site Goettingen, D-37075 Goettingen, Germany
- Benjamin Meder
- Department of Cardiology, Angiology and Pneumology, University Hospital Heidelberg, D-69120 Heidelberg, Germany; German Center for Cardiovascular Research (DZHK), Partner site Heidelberg, D-69120 Heidelberg, Germany; Stanford Genome Technology Center, Department of Genetics, Stanford Medical School, Palo Alto, CA 94304, USA; Corresponding author.
- Journal volume & issue
-
Vol. 20,
no. 1
pp. 129 – 146
Abstract
Alternative mRNA splicing is a fundamental process to increase the versatility of the genome. In humans, cardiac mRNA splicing is involved in the pathophysiology of heart failure. Mutations in the splicing factor RNA binding motif protein 20 (RBM20) cause severe forms of cardiomyopathy. To identify novel cardiomyopathy-associated splicing factors, RNA-seq and tissue-enrichment analyses were performed, which identified up-regulated expression of Sam68-Like mammalian protein 2 (SLM2) in the left ventricle of dilated cardiomyopathy (DCM) patients. In the human heart, SLM2 binds to important transcripts of sarcomere constituents, such as those encoding myosin light chain 2 (MYL2), troponin I3 (TNNI3), troponin T2 (TNNT2), tropomyosin 1/2 (TPM1/2), and titin (TTN). Mechanistically, SLM2 mediates intron retention, prevents exon exclusion, and thereby mediates alternative splicing of the mRNA regions encoding the variable proline-, glutamate-, valine-, and lysine-rich (PEVK) domain and another part of the I-band region of titin. In summary, SLM2 is a novel cardiac splicing regulator with essential functions for maintaining cardiomyocyte integrity by binding to and processing the mRNAs of essential cardiac constituents such as titin.