Geoderma (Dec 2023)
An interlaboratory comparison of mid-infrared spectra acquisition: Instruments and procedures matter
- José L. Safanelli,
- Jonathan Sanderman,
- Dellena Bloom,
- Katherine Todd-Brown,
- Leandro L. Parente,
- Tomislav Hengl,
- Sean Adam,
- Franck Albinet,
- Eyal Ben-Dor,
- Claudia M. Boot,
- James H. Bridson,
- Sabine Chabrillat,
- Leonardo Deiss,
- José A.M. Demattê,
- M. Scott Demyan,
- Gerd Dercon,
- Sebastian Doetterl,
- Fenny van Egmond,
- Rich Ferguson,
- Loretta G. Garrett,
- Michelle L. Haddix,
- Stephan M. Haefele,
- Maria Heiling,
- Javier Hernandez-Allica,
- Jingyi Huang,
- Julie D. Jastrow,
- Konstantinos Karyotis,
- Megan B. Machmuller,
- Malefetsane Khesuoe,
- Andrew Margenot,
- Roser Matamala,
- Jessica R. Miesel,
- Abdul M. Mouazen,
- Penelope Nagel,
- Sunita Patel,
- Muhammad Qaswar,
- Selebalo Ramakhanna,
- Christian Resch,
- Jean Robertson,
- Pierre Roudier,
- Marmar Sabetizade,
- Itamar Shabtai,
- Faisal Sherif,
- Nishant Sinha,
- Johan Six,
- Laura Summerauer,
- Cathy L. Thomas,
- Arsenio Toloza,
- Beata Tomczyk-Wójtowicz,
- Nikolaos L. Tsakiridis,
- Bas van Wesemael,
- Finnleigh Woodings,
- George C. Zalidis,
- Wiktor R. Żelazny
Affiliations
- José L. Safanelli
- Woodwell Climate Research Center, Falmouth, MA, USA
- Jonathan Sanderman
- Woodwell Climate Research Center, Falmouth, MA, USA; Corresponding author.
- Dellena Bloom
- Department of Environmental Engineering Sciences, University of Florida, Gainesville, FL, USA
- Katherine Todd-Brown
- Department of Environmental Engineering Sciences, University of Florida, Gainesville, FL, USA
- Leandro L. Parente
- OpenGeoHub Foundation, Wageningen, the Netherlands
- Tomislav Hengl
- OpenGeoHub Foundation, Wageningen, the Netherlands
- Sean Adam
- TU Bergakademie Freiberg, Freiberg, Germany
- Franck Albinet
- Soil and Water Management and Crop Nutrition Laboratory, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, International Atomic Energy Agency, Austria; Soil and Water Management Unit, KU Leuven, Leuven, Belgium
- Eyal Ben-Dor
- Remote Sensing Laboratory, Department of Geography and Human Environment, Porter School of Environment and Earth Science, Tel Aviv University, 69978 Tel Aviv, Israel
- Claudia M. Boot
- Department of Chemistry, Colorado State University, Fort Collins, CO, USA
- James H. Bridson
- Scion, Private Bag 3020, Rotorua 3046, New Zealand
- Sabine Chabrillat
- Helmholtz Center Potsdam GFZ German Research Center for Geosciences, Potsdam, Germany; Leibniz University Hannover, Institute of Soil Science, Hannover, Germany
- Leonardo Deiss
- The Ohio State University, Wooster, OH, USA
- José A.M. Demattê
- Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, SP, Brazil
- M. Scott Demyan
- The Ohio State University, Columbus, OH, USA
- Gerd Dercon
- Soil and Water Management and Crop Nutrition Laboratory, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, International Atomic Energy Agency, Austria
- Sebastian Doetterl
- Department of Environmental Systems Science, ETH Zurich, 8092 Zurich, Switzerland
- Fenny van Egmond
- ISRIC World Soil Information, Wageningen, the Netherlands
- Rich Ferguson
- USDA-NRCS Kellogg Soil Survey Laboratory, Lincoln, NE, USA
- Loretta G. Garrett
- Scion, Private Bag 3020, Rotorua 3046, New Zealand
- Michelle L. Haddix
- Department of Soil and Crop Sciences, Colorado State University, Fort Collins, CO, USA
- Stephan M. Haefele
- Sustainable Soils and Crops, Rothamsted Research, UK
- Maria Heiling
- Soil and Water Management and Crop Nutrition Laboratory, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, International Atomic Energy Agency, Austria
- Javier Hernandez-Allica
- Sustainable Soils and Crops, Rothamsted Research, UK
- Jingyi Huang
- University of Wisconsin-Madison, Madison, WI, USA
- Julie D. Jastrow
- Environmental Science Division, Argonne National Laboratory, Lemont, IL, USA
- Konstantinos Karyotis
- Laboratory of Remote Sensing, Spectroscopy, and GIS, Department of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
- Megan B. Machmuller
- Department of Soil and Crop Sciences, Colorado State University, Fort Collins, CO, USA
- Malefetsane Khesuoe
- Department of Agricultural Research, Maseru, Lesotho
- Andrew Margenot
- University of Illinois Urbana-Champaign, Urbana, IL, USA
- Roser Matamala
- Environmental Science Division, Argonne National Laboratory, Lemont, IL, USA
- Jessica R. Miesel
- Michigan State University, Department of Plant, Soil and Microbial Sciences, East Lansing, MI, USA
- Abdul M. Mouazen
- Department of Environment, Ghent University, Coupure Links 653, 9000 Gent, Belgium
- Penelope Nagel
- Persistence Data Mining Inc., La Jolla, CA, USA
- Sunita Patel
- Scion, Private Bag 3020, Rotorua 3046, New Zealand
- Muhammad Qaswar
- Department of Environment, Ghent University, Coupure Links 653, 9000 Gent, Belgium
- Selebalo Ramakhanna
- Department of Agricultural Research, Maseru, Lesotho
- Christian Resch
- Soil and Water Management and Crop Nutrition Laboratory, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, International Atomic Energy Agency, Austria
- Jean Robertson
- The James Hutton Institute, Craigiebuckler, Aberdeen AB15 8QH, UK
- Pierre Roudier
- Manaaki Whenua - Landcare Research, Private Bag 11052, Manawatū Mail Centre, Palmerston North 4442, New Zealand
- Marmar Sabetizade
- Earth and Life Institute, Université Catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
- Itamar Shabtai
- Department of Environmental Science and Forestry, Connecticut Agricultural Experiment Station, New Haven, CT, USA
- Faisal Sherif
- Michigan State University, Department of Plant, Soil and Microbial Sciences, East Lansing, MI, USA
- Nishant Sinha
- Division of Soil Physics, ICAR-IISS, Bhopal, India
- Johan Six
- Department of Environmental Systems Science, ETH Zurich, 8092 Zurich, Switzerland
- Laura Summerauer
- Department of Environmental Systems Science, ETH Zurich, 8092 Zurich, Switzerland
- Cathy L. Thomas
- Sustainable Soils and Crops, Rothamsted Research, UK
- Arsenio Toloza
- Soil and Water Management and Crop Nutrition Laboratory, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, International Atomic Energy Agency, Austria
- Beata Tomczyk-Wójtowicz
- AgroCares Golden Standard Laboratory, Care4Agro B.V., 6709PA Wageningen, the Netherlands
- Nikolaos L. Tsakiridis
- Laboratory of Remote Sensing, Spectroscopy, and GIS, Department of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
- Bas van Wesemael
- Earth and Life Institute, Université Catholique de Louvain, 1348 Louvain-la-Neuve, Belgium
- Finnleigh Woodings
- University of Illinois Urbana-Champaign, Urbana, IL, USA
- George C. Zalidis
- Laboratory of Remote Sensing, Spectroscopy, and GIS, Department of Agriculture, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
- Wiktor R. Żelazny
- Division of Crop Management Systems, Crop Research Institute Praha-Ruzyně, Praha, Czech Republic
- Journal volume & issue
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Vol. 440
p. 116724
Abstract
Diffuse reflectance spectroscopy has been extensively employed to deliver timely and cost-effective predictions of a number of soil properties. However, although several soil spectral laboratories have been established worldwide, the distinct characteristics of instruments and operations still hamper further integration and interoperability across mid-infrared (MIR) soil spectral libraries. In this study, we conducted a large-scale ring trial experiment to understand the lab-to-lab variability of multiple MIR instruments. By developing a systematic evaluation of different mathematical treatments with modeling algorithms, including regular preprocessing and spectral standardization, we quantified and evaluated instruments' dissimilarity and how this impacts internal and shared model performance. We found that all instruments delivered good predictions when calibrated internally using the same instruments' characteristics and standard operating procedures by solely relying on regular spectral preprocessing that accounts for light scattering and multiplicative/additive effects, e.g., using standard normal variate (SNV). When performing model transfer from a large public library (the USDA NSSC-KSSL MIR library) to secondary instruments, good performance was also achieved by regular preprocessing (e.g., SNV) if both instruments shared the same manufacturer. However, significant differences between the KSSL MIR library and contrasting ring trial instruments responses were evident and confirmed by a semi-unsupervised spectral clustering. For heavily contrasting setups, spectral standardization was necessary before transferring prediction models. Non-linear model types like Cubist and memory-based learning delivered more precise estimates because they seemed to be less sensitive to spectral variations than global partial least square regression. In summary, the results from this study can assist new laboratories in building spectroscopy capacity utilizing existing MIR spectral libraries and support the recent global efforts to make soil spectroscopy universally accessible with centralized or shared operating procedures.