IUCrJ (Sep 2018)

De novo protein structure determination by heavy-atom soaking in lipidic cubic phase and SIRAS phasing using serial synchrotron crystallography

  • S. Botha,
  • D. Baitan,
  • K. E. J. Jungnickel,
  • D. Oberthür,
  • C. Schmidt,
  • S. Stern,
  • M. O. Wiedorn,
  • M. Perbandt,
  • H. N. Chapman,
  • C. Betzel

DOI
https://doi.org/10.1107/S2052252518009223
Journal volume & issue
Vol. 5, no. 5
pp. 524 – 530

Abstract

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During the past few years, serial crystallography methods have undergone continuous development and serial data collection has become well established at high-intensity synchrotron-radiation beamlines and XFEL radiation sources. However, the application of experimental phasing to serial crystallography data has remained a challenging task owing to the inherent inaccuracy of the diffraction data. Here, a particularly gentle method for incorporating heavy atoms into micrometre-sized crystals utilizing lipidic cubic phase (LCP) as a carrier medium is reported. Soaking in LCP prior to data collection offers a new, efficient and gentle approach for preparing heavy-atom-derivative crystals directly before diffraction data collection using serial crystallography methods. This approach supports effective phasing by utilizing a reasonably low number of diffraction patterns. Using synchrotron radiation and exploiting the anomalous scattering signal of mercury for single isomorphous replacement with anomalous scattering (SIRAS) phasing resulted in high-quality electron-density maps that were sufficient for building a complete structural model of proteinase K at 1.9 Å resolution using automatic model-building tools.

Keywords