Inferring the postmortem interval of rat cadaver after boiling water treatment based on microbial community succession

Abstract

Background: In forensic investigations, accurate estimation of the postmortem interval (PMI) is an important task, but also an ongoing challenge. Especially in cases where the cadaver has been specially treated, for example, by boiling, the determination of PMI becomes extremely difficult. Previous studies have shown that the succession of the microbial community after decomposition of the cadaver can be used to infer PMI. However, the feasibility of determining the PMI of boiled cadavers has not yet been demonstrated. Aims and Objectives: The main objective of this study was to test whether we can infer PMI of boiled cadavers based on the succession of microbial communities. Materials and Methods: SD rats were killed by cervical dislocation. Subsequently, the rat cadavers were divided into the case (boiled cadavers) and control (unboiled cadavers) groups. Rectal samples were collected from the rats for 45 days and at nine time points. High-throughput sequencing of the 16S rRNA gene was performed to characterize the microbial community in the rectum. Results: The results showed that the composition and relative abundance of bacterial communities at the phylum level were significantly different between the case and control groups. The alpha diversity of the microbial community showed a decreasing trend with the decomposition process. Principal coordinate analysis showed that the case and control groups had obvious patterns along the succession of microbial communities. The rectal microbial communities showed a significant linear trend in the time course of decomposition. A random forest model was used to infer PMI. The goodness-of-fit (R2) of the model was 68.00% and 84.00%, and the mean absolute errors were 2.05 and 1.48 days within 45 days of decomposition for the case and control groups, respectively. Conclusions: Our results suggest that microbial community succession could be a potential method to infer PMI of boiled cadavers.

Keywords

• boiled rat cadavers
• forensic microorganism
• high-throughput sequencing
• postmortem interval
• random forest model