Cells (Oct 2023)

Differential Transcriptomic Signatures of Small Airway Cell Cultures Derived from IPF and COVID-19-Induced Exacerbation of Interstitial Lung Disease

  • Katie Uhl,
  • Shreya Paithankar,
  • Dmitry Leshchiner,
  • Tara E. Jager,
  • Mohamed Abdelgied,
  • Bhavna Dixit,
  • Raya Marashdeh,
  • Dewen Luo-Li,
  • Kaylie Tripp,
  • Angela M. Peraino,
  • Maximiliano Tamae Kakazu,
  • Cameron Lawson,
  • Dave W. Chesla,
  • Ningzhi Luo-Li,
  • Edward T. Murphy,
  • Jeremy Prokop,
  • Bin Chen,
  • Reda E. Girgis,
  • Xiaopeng Li

DOI
https://doi.org/10.3390/cells12202501
Journal volume & issue
Vol. 12, no. 20
p. 2501

Abstract

Read online

Idiopathic pulmonary fibrosis (IPF) is a pathological condition wherein lung injury precipitates the deposition of scar tissue, ultimately leading to a decline in pulmonary function. Existing research indicates a notable exacerbation in the clinical prognosis of IPF patients following infection with COVID-19. This investigation employed bulk RNA-sequencing methodologies to describe the transcriptomic profiles of small airway cell cultures derived from IPF and post-COVID fibrosis patients. Differential gene expression analysis unveiled heightened activation of pathways associated with microtubule assembly and interferon signaling in IPF cell cultures. Conversely, post-COVID fibrosis cell cultures exhibited distinctive characteristics, including the upregulation of pathways linked to extracellular matrix remodeling, immune system response, and TGF-β1 signaling. Notably, BMP signaling levels were elevated in cell cultures derived from IPF patients compared to non-IPF control and post-COVID fibrosis samples. These findings underscore the molecular distinctions between IPF and post-COVID fibrosis, particularly in the context of signaling pathways associated with each condition. A better understanding of the underlying molecular mechanisms holds the promise of identifying potential therapeutic targets for future interventions in these diseases.

Keywords