Computational and Structural Biotechnology Journal (Jan 2025)
CompSafeNano project: NanoInformatics approaches for safe-by-design nanomaterials
- Dimitrios Zouraris,
- Angelos Mavrogiorgis,
- Andreas Tsoumanis,
- Laura Aliisa Saarimäki,
- Giusy del Giudice,
- Antonio Federico,
- Angela Serra,
- Dario Greco,
- Ian Rouse,
- Julia Subbotina,
- Vladimir Lobaskin,
- Karolina Jagiello,
- Krzesimir Ciura,
- Beata Judzinska,
- Alicja Mikolajczyk,
- Anita Sosnowska,
- Tomasz Puzyn,
- Mary Gulumian,
- Victor Wepener,
- Diego S.T. Martinez,
- Romana Petry,
- Naouale El Yamani,
- Elise Rundén-Pran,
- Sivakumar Murugadoss,
- Sergey Shaposhnikov,
- Vasileios Minadakis,
- Periklis Tsiros,
- Harry Sarimveis,
- Eleonora Marta Longhin,
- Tanima SenGupta,
- Ann-Karin Hardie Olsen,
- Viera Skakalova,
- Peter Hutar,
- Maria Dusinska,
- Anastasios G. Papadiamantis,
- L. Cristiana Gheorghe,
- Katie Reilly,
- Emilie Brun,
- Sami Ullah,
- Sebastien Cambier,
- Tommaso Serchi,
- Kaido Tämm,
- Candida Lorusso,
- Francesco Dondero,
- Evangelos Melagrakis,
- Muhammad Moazam Fraz,
- Georgia Melagraki,
- Iseult Lynch,
- Antreas Afantitis
Affiliations
- Dimitrios Zouraris
- NovaMechanics Ltd, Nicosia 1070, Cyprus; Entelos Institute, Larnaca 6059, Cyprus
- Angelos Mavrogiorgis
- NovaMechanics Ltd, Nicosia 1070, Cyprus
- Andreas Tsoumanis
- NovaMechanics Ltd, Nicosia 1070, Cyprus; NovaMechanics MIKE, Piraeus 18545, Greece
- Laura Aliisa Saarimäki
- Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere 33520 Finland
- Giusy del Giudice
- Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere 33520 Finland
- Antonio Federico
- Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere 33520 Finland
- Angela Serra
- Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere 33520 Finland
- Dario Greco
- Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere 33520 Finland
- Ian Rouse
- School of Physics, University College Dublin, Belfield, Dublin, Ireland
- Julia Subbotina
- School of Physics, University College Dublin, Belfield, Dublin, Ireland
- Vladimir Lobaskin
- School of Physics, University College Dublin, Belfield, Dublin, Ireland
- Karolina Jagiello
- QSAR Lab, Trzy Lipy 3, Gdańsk 80-172, Poland; University of Gdansk, Faculty of Chemistry, Wita Stwosza 63, Gdansk 80-308, Poland
- Krzesimir Ciura
- QSAR Lab, Trzy Lipy 3, Gdańsk 80-172, Poland; University of Gdansk, Faculty of Chemistry, Wita Stwosza 63, Gdansk 80-308, Poland
- Beata Judzinska
- QSAR Lab, Trzy Lipy 3, Gdańsk 80-172, Poland; University of Gdansk, Faculty of Chemistry, Wita Stwosza 63, Gdansk 80-308, Poland
- Alicja Mikolajczyk
- QSAR Lab, Trzy Lipy 3, Gdańsk 80-172, Poland; University of Gdansk, Faculty of Chemistry, Wita Stwosza 63, Gdansk 80-308, Poland
- Anita Sosnowska
- QSAR Lab, Trzy Lipy 3, Gdańsk 80-172, Poland; University of Gdansk, Faculty of Chemistry, Wita Stwosza 63, Gdansk 80-308, Poland
- Tomasz Puzyn
- QSAR Lab, Trzy Lipy 3, Gdańsk 80-172, Poland; University of Gdansk, Faculty of Chemistry, Wita Stwosza 63, Gdansk 80-308, Poland
- Mary Gulumian
- Water Research Group, School of Biological Sciences, North-West University, Potchefstroom, North-West Province, South Africa
- Victor Wepener
- Water Research Group, School of Biological Sciences, North-West University, Potchefstroom, North-West Province, South Africa
- Diego S.T. Martinez
- Brazilian Nanotechnology National Laboratory (LNNano), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Sao Paulo, Brazil
- Romana Petry
- Brazilian Nanotechnology National Laboratory (LNNano), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Sao Paulo, Brazil
- Naouale El Yamani
- Department of Environmental Chemistry and Health, Climate and Environmental Research Institute-NILU, Kjeller 2007, Norway
- Elise Rundén-Pran
- Department of Environmental Chemistry and Health, Climate and Environmental Research Institute-NILU, Kjeller 2007, Norway
- Sivakumar Murugadoss
- Department of Environmental Chemistry and Health, Climate and Environmental Research Institute-NILU, Kjeller 2007, Norway
- Sergey Shaposhnikov
- NorGenoTech, Oslo, Norway
- Vasileios Minadakis
- School of Chemical Engineering, National Technical University of Athens, Heroon Polytechniou 9, Zografou 15780, Greece
- Periklis Tsiros
- School of Chemical Engineering, National Technical University of Athens, Heroon Polytechniou 9, Zografou 15780, Greece
- Harry Sarimveis
- School of Chemical Engineering, National Technical University of Athens, Heroon Polytechniou 9, Zografou 15780, Greece
- Eleonora Marta Longhin
- Department of Environmental Chemistry and Health, Climate and Environmental Research Institute-NILU, Kjeller 2007, Norway
- Tanima SenGupta
- Department of Environmental Chemistry and Health, Climate and Environmental Research Institute-NILU, Kjeller 2007, Norway
- Ann-Karin Hardie Olsen
- Department of Environmental Chemistry and Health, Climate and Environmental Research Institute-NILU, Kjeller 2007, Norway
- Viera Skakalova
- Danubia Nanotech, Bratislava, Slovakia
- Peter Hutar
- Danubia Nanotech, Bratislava, Slovakia
- Maria Dusinska
- NorGenoTech, Oslo, Norway
- Anastasios G. Papadiamantis
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
- L. Cristiana Gheorghe
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
- Katie Reilly
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
- Emilie Brun
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
- Sami Ullah
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom
- Sebastien Cambier
- Environmental Health research group, Luxembourg Institute of Science and Technology, 41 rue du Brill, Belvaux L4422, Luxembourg
- Tommaso Serchi
- Environmental Health research group, Luxembourg Institute of Science and Technology, 41 rue du Brill, Belvaux L4422, Luxembourg
- Kaido Tämm
- Institute of Chemistry, University of Tartu, Ravila 14A, Tartu 50411, Estonia
- Candida Lorusso
- Department of Science and Technological Innovation, Università del Piemonte Orientale, Viale Michel 11, Alessandria 15121, Italy
- Francesco Dondero
- Entelos Institute, Larnaca 6059, Cyprus; Department of Science and Technological Innovation, Università del Piemonte Orientale, Viale Michel 11, Alessandria 15121, Italy
- Evangelos Melagrakis
- Calculus IKE, Pireaus, Greece
- Muhammad Moazam Fraz
- National University of Sciences and Technology (NUST), Islamabad, Pakistan
- Georgia Melagraki
- Division of Physical Sciences and Applications, Hellenic Military Academy, Vari, Greece
- Iseult Lynch
- Entelos Institute, Larnaca 6059, Cyprus; School of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom; Correspondence to: University of Birmingham, Birmingham B15 2TT, United Kingdom.
- Antreas Afantitis
- NovaMechanics Ltd, Nicosia 1070, Cyprus; Entelos Institute, Larnaca 6059, Cyprus; NovaMechanics MIKE, Piraeus 18545, Greece; Corresponding author at: NovaMechanics Ltd, Nicosia 1070, Cyprus.
- Journal volume & issue
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Vol. 29
pp. 13 – 28
Abstract
The CompSafeNano project, a Research and Innovation Staff Exchange (RISE) project funded under the European Union's Horizon 2020 program, aims to advance the safety and innovation potential of nanomaterials (NMs) by integrating cutting-edge nanoinformatics, computational modelling, and predictive toxicology to enable design of safer NMs at the earliest stage of materials development. The project leverages Safe-by-Design (SbD) principles to ensure the development of inherently safer NMs, enhancing both regulatory compliance and international collaboration. By building on established nanoinformatics frameworks, such as those developed in the H2020-funded projects NanoSolveIT and NanoCommons, CompSafeNano addresses critical challenges in nanosafety through development and integration of innovative methodologies, including advanced in vitro models, in silico approaches including machine learning (ML) and artificial intelligence (AI)-driven predictive models and 1st-principles computational modelling of NMs properties, interactions and effects on living systems. Significant progress has been made in generating atomistic and quantum-mechanical descriptors for various NMs, evaluating their interactions with biological systems (from small molecules or metabolites, to proteins, cells, organisms, animals, humans and ecosystems), and in developing predictive models for NMs risk assessment. The CompSafeNano project has also focused on implementing and further standardising data reporting templates and enhancing data management practices, ensuring adherence to the FAIR (Findable, Accessible, Interoperable, Reusable) data principles. Despite challenges, such as limited regulatory acceptance of New Approach Methodologies (NAMs) currently, which has implications for predictive nanosafety assessment, CompSafeNano has successfully developed tools and models that are integral to the safety evaluation of NMs, and that enable the extensive datasets on NMs safety to be utilised for the re-design of NMs that are inherently safer, including through prediction of the acquired biomolecule coronas which provide the biological or environmental identities to NMs, promoting their sustainable use in diverse applications. Future efforts will concentrate on further refining these models, expanding the NanoPharos Database, and working with regulatory stakeholders thereby fostering the widespread adoption of SbD practices across the nanotechnology sector. CompSafeNano's integrative approach, multidisciplinary collaboration and extensive stakeholder engagement, position the project as a critical driver of innovation in NMs SbD methodologies and in the development and implementation of computational nanosafety.