A new unified framework for supervised 3D crown segmentation (TreeisoNet) using deep neural networks across airborne, UAV-borne, and terrestrial laser scans

Abstract

Accurately defining and isolating 3D tree space is critical for extracting and analyzing tree inventory attributes, yet it remains a challenge due to the structural complexity and heterogeneity within natural forests. This study introduces TreeisoNet, a suite of supervised deep neural networks tailored for robust 3D tree segmentation across natural forest environments. These networks are specifically designed to identify tree locations, stem components (if available), and crown clusters, making them adaptable to varying scales of laser scanning from airborne laser scannner (ALS), terrestrial laser scanner (TLS), and unmanned aerial vehicle (UAV). Our evaluation used three benchmark datasets with manually isolated tree references, achieving mean intersection-over-union (mIoU) accuracies of 0.81 for UAV, 0.76 for TLS, and 0.59 for ALS, which are competitive with contemporary algorithms such as ForAINet, Treeiso, Mask R-CNN, and AMS3D. Noise from stem point delineation minimally impacted stem location detection but significantly affected crown clustering. Moderate manual refinement of stem points or tree centers significantly improved tree segmentation accuracies, achieving 0.85 for UAV, 0.86 for TLS, and 0.80 for ALS. The study confirms SegFormer as an effective 3D point-level classifier and an offset-based UNet as a superior segmenter, with the latter outperforming unsupervised solutions like watershed and shortest-path methods. TreeisoNet demonstrates strong adaptability in capturing invariant tree geometry features, ensuring transferability across different resolutions, sites, and sensors with minimal accuracy loss.

Keywords

• Supervised deep neural networks
• 3D tree segmentation
• Treeisonet
• LiDAR
• Stem classification