Journal of Integrative Bioinformatics (Jun 2015)

Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2

  • Mi Huaiyu,
  • Schreiber Falk,
  • Moodie Stuart,
  • Czauderna Tobias,
  • Demir Emek,
  • Haw Robin,
  • Luna Augustin,
  • Le Novère Nicolas,
  • Sorokin Anatoly,
  • Villéger Alice

DOI
https://doi.org/10.1515/jib-2015-265
Journal volume & issue
Vol. 12, no. 2
pp. 340 – 381

Abstract

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The Systems Biological Graphical Notation (SBGN) is an international community effort for standardized graphical representations of biological pathways and networks. The goal of SBGN is to provide unambiguous pathway and network maps for readers with different scientific backgrounds as well as to support efficient and accurate exchange of biological knowledge between different research communities, industry, and other players in systems biology. Three SBGN languages, Process Description (PD), Entity Relationship (ER) and Activity Flow (AF), allow for the representation of different aspects of biological and biochemical systems at different levels of detail.