Frontiers in Marine Science (Jan 2023)
Characterization and genome analysis of Vibrio phage vB_VhaP_PG11, representing a new viral genus
- Yajun Jing,
- Yajun Jing,
- Ruizhe Guo,
- Ruizhe Guo,
- Hongmin Wang,
- Hongmin Wang,
- Yantao Liang,
- Yantao Liang,
- Yantao Liang,
- Yundan Liu,
- Yundan Liu,
- Yifei Feng,
- Qin Ma,
- Hongbing Shao,
- Hongbing Shao,
- Hongbing Shao,
- Yeong Yik Sung,
- Yeong Yik Sung,
- Wen Jye Mok,
- Wen Jye Mok,
- Li Lian Wong,
- Li Lian Wong,
- Yu-Zhong Zhang,
- Yu-Zhong Zhang,
- Andrew McMinn,
- Andrew McMinn,
- Andrew McMinn,
- Min Wang,
- Min Wang,
- Min Wang,
- Min Wang,
- Min Wang,
- Jinyan Xing
Affiliations
- Yajun Jing
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao University, Qingdao, China
- Yajun Jing
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Ruizhe Guo
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Ruizhe Guo
- Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China
- Hongmin Wang
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Hongmin Wang
- Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China
- Yantao Liang
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Yantao Liang
- Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China
- Yantao Liang
- UMT-OUC Joint Academic Centre for Marine Studies, Qingdao, China
- Yundan Liu
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Yundan Liu
- Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China
- Yifei Feng
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Qin Ma
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Hongbing Shao
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Hongbing Shao
- Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China
- Hongbing Shao
- UMT-OUC Joint Academic Centre for Marine Studies, Qingdao, China
- Yeong Yik Sung
- UMT-OUC Joint Academic Centre for Marine Studies, Qingdao, China
- Yeong Yik Sung
- Institute of Marine Biotechnology, Universiti Malaysia Terengganu, Kuala Terengganu, Malaysia
- Wen Jye Mok
- UMT-OUC Joint Academic Centre for Marine Studies, Qingdao, China
- Wen Jye Mok
- Institute of Marine Biotechnology, Universiti Malaysia Terengganu, Kuala Terengganu, Malaysia
- Li Lian Wong
- UMT-OUC Joint Academic Centre for Marine Studies, Qingdao, China
- Li Lian Wong
- Institute of Marine Biotechnology, Universiti Malaysia Terengganu, Kuala Terengganu, Malaysia
- Yu-Zhong Zhang
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Yu-Zhong Zhang
- State Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, Qingdao, China
- Andrew McMinn
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Andrew McMinn
- Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China
- Andrew McMinn
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, TAS, Australia
- Min Wang
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao University, Qingdao, China
- Min Wang
- College of Marine Life Sciences, Ocean University of China, Qingdao, China
- Min Wang
- Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China
- Min Wang
- UMT-OUC Joint Academic Centre for Marine Studies, Qingdao, China
- Min Wang
- Haide College, Ocean University of China, Qingdao, China
- Jinyan Xing
- Department of Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao University, Qingdao, China
- DOI
- https://doi.org/10.3389/fmars.2022.1092917
- Journal volume & issue
-
Vol. 9
Abstract
Vibrio is a kind of common gram-negative bacteria, which is widely distributed in marine and estuarine environments. In the study, a novel marine phage vB_VhaP_PG11, infecting Vibrio hangzhouensis, was isolated from the offshore waters of Qingdao, China. vB_VhaP_PG11 is a double-stranded DNA phage. The whole genome proteomic tree shows that vB_VhaP_PG11 phage is related to two Vibrio phages, Vibrio phage 1.238.A._10N.261.52.F10 and Vibrio phage 1.245.O._10N.261.54.C7, but with low homology. Their amino acids identity with vB_VhaP_PG11 is 42.77 and 41.49% respectively. The prediction results of genome-blast distance phylogeny (GBDP) and the analysis gene-sharing network indicate that vB_VhaP_PG11 belongs to a new genus in Schitoviridae, named Qingschitovirus. The study of Vibrio phage vB_VhaP_PG11 provides basic information contributing to a better understanding of interactions between Vibrio phages and their hosts and helps analyze unknown viral sequences in the metagenomic database.
Keywords
- vibrio phage
- genomic and comparative genomic analysis
- phylogenetic analysis
- schitoviridae
- qingschitovirus
