Nature Communications (Nov 2023)
Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma
- Igor Dolgalev,
- Hua Zhou,
- Nina Murrell,
- Hortense Le,
- Theodore Sakellaropoulos,
- Nicolas Coudray,
- Kelsey Zhu,
- Varshini Vasudevaraja,
- Anna Yeaton,
- Chandra Goparaju,
- Yonghua Li,
- Imran Sulaiman,
- Jun-Chieh J. Tsay,
- Peter Meyn,
- Hussein Mohamed,
- Iris Sydney,
- Tomoe Shiomi,
- Sitharam Ramaswami,
- Navneet Narula,
- Ruth Kulicke,
- Fred P. Davis,
- Nicolas Stransky,
- Gromoslaw A. Smolen,
- Wei-Yi Cheng,
- James Cai,
- Salman Punekar,
- Vamsidhar Velcheti,
- Daniel H. Sterman,
- J. T. Poirier,
- Ben Neel,
- Kwok-Kin Wong,
- Luis Chiriboga,
- Adriana Heguy,
- Thales Papagiannakopoulos,
- Bettina Nadorp,
- Matija Snuderl,
- Leopoldo N. Segal,
- Andre L. Moreira,
- Harvey I. Pass,
- Aristotelis Tsirigos
Affiliations
- Igor Dolgalev
- Department of Pathology, NYU Grossman School of Medicine
- Hua Zhou
- Department of Pathology, NYU Grossman School of Medicine
- Nina Murrell
- Department of Pathology, NYU Grossman School of Medicine
- Hortense Le
- Department of Pathology, NYU Grossman School of Medicine
- Theodore Sakellaropoulos
- Department of Pathology, NYU Grossman School of Medicine
- Nicolas Coudray
- Applied Bioinformatics Laboratories, NYU Grossman School of Medicine
- Kelsey Zhu
- Department of Pathology, NYU Grossman School of Medicine
- Varshini Vasudevaraja
- Department of Pathology, NYU Grossman School of Medicine
- Anna Yeaton
- The Optical Profiling Platform at The Broad Institute of MIT And Harvard
- Chandra Goparaju
- Department of Cardiothoracic Surgery, NYU Grossman School of Medicine
- Yonghua Li
- Division of Pulmonary, Critical Care and Sleep Medicine, NYU Grossman School of Medicine
- Imran Sulaiman
- Division of Pulmonary, Critical Care and Sleep Medicine, NYU Grossman School of Medicine
- Jun-Chieh J. Tsay
- Division of Pulmonary, Critical Care and Sleep Medicine, NYU Grossman School of Medicine
- Peter Meyn
- Genome Technology Center, Office of Science and Research, NYU Grossman School of Medicine
- Hussein Mohamed
- Department of Pathology, NYU Grossman School of Medicine
- Iris Sydney
- Center for Biospecimen Research and Development, NYU Grossman School of Medicine
- Tomoe Shiomi
- Center for Biospecimen Research and Development, NYU Grossman School of Medicine
- Sitharam Ramaswami
- Department of Pathology, NYU Grossman School of Medicine
- Navneet Narula
- Department of Pathology, NYU Grossman School of Medicine
- Ruth Kulicke
- Celsius Therapeutics, Cambridge
- Fred P. Davis
- Celsius Therapeutics, Cambridge
- Nicolas Stransky
- Celsius Therapeutics, Cambridge
- Gromoslaw A. Smolen
- Celsius Therapeutics, Cambridge
- Wei-Yi Cheng
- Pharma Research & Early Development Informatics, Roche Innovation Center New York
- James Cai
- Pharma Research & Early Development Informatics, Roche Innovation Center New York
- Salman Punekar
- Laura and Isaac Perlmutter Cancer Center, New York University Langone Health
- Vamsidhar Velcheti
- Laura and Isaac Perlmutter Cancer Center, New York University Langone Health
- Daniel H. Sterman
- Division of Pulmonary, Critical Care and Sleep Medicine, NYU Grossman School of Medicine
- J. T. Poirier
- Laura and Isaac Perlmutter Cancer Center, New York University Langone Health
- Ben Neel
- Laura and Isaac Perlmutter Cancer Center, New York University Langone Health
- Kwok-Kin Wong
- Laura and Isaac Perlmutter Cancer Center, New York University Langone Health
- Luis Chiriboga
- Department of Pathology, NYU Grossman School of Medicine
- Adriana Heguy
- Department of Pathology, NYU Grossman School of Medicine
- Thales Papagiannakopoulos
- Department of Pathology, NYU Grossman School of Medicine
- Bettina Nadorp
- Department of Pathology, NYU Grossman School of Medicine
- Matija Snuderl
- Department of Pathology, NYU Grossman School of Medicine
- Leopoldo N. Segal
- Division of Pulmonary, Critical Care and Sleep Medicine, NYU Grossman School of Medicine
- Andre L. Moreira
- Department of Pathology, NYU Grossman School of Medicine
- Harvey I. Pass
- Department of Cardiothoracic Surgery, NYU Grossman School of Medicine
- Aristotelis Tsirigos
- Department of Pathology, NYU Grossman School of Medicine
- DOI
- https://doi.org/10.1038/s41467-023-42327-x
- Journal volume & issue
-
Vol. 14,
no. 1
pp. 1 – 16
Abstract
Abstract Approximately 30% of early-stage lung adenocarcinoma patients present with disease progression after successful surgical resection. Despite efforts of mapping the genetic landscape, there has been limited success in discovering predictive biomarkers of disease outcomes. Here we performed a systematic multi-omic assessment of 143 tumors and matched tumor-adjacent, histologically-normal lung tissue with long-term patient follow-up. Through histologic, mutational, and transcriptomic profiling of tumor and adjacent-normal tissue, we identified an inflammatory gene signature in tumor-adjacent tissue as the strongest clinical predictor of disease progression. Single-cell transcriptomic analysis demonstrated the progression-associated inflammatory signature was expressed in both immune and non-immune cells, and cell type-specific profiling in monocytes further improved outcome predictions. Additional analyses of tumor-adjacent transcriptomic data from The Cancer Genome Atlas validated the association of the inflammatory signature with worse outcomes across cancers. Collectively, our study suggests that molecular profiling of tumor-adjacent tissue can identify patients at high risk for disease progression.