eLife (Jul 2024)

Chemoproteomics validates selective targeting of Plasmodium M1 alanyl aminopeptidase as an antimalarial strategy

  • Carlo Giannangelo,
  • Matthew P Challis,
  • Ghizal Siddiqui,
  • Rebecca Edgar,
  • Tess R Malcolm,
  • Chaille T Webb,
  • Nyssa Drinkwater,
  • Natalie Vinh,
  • Christopher Macraild,
  • Natalie Counihan,
  • Sandra Duffy,
  • Sergio Wittlin,
  • Shane M Devine,
  • Vicky M Avery,
  • Tania De Koning-Ward,
  • Peter Scammells,
  • Sheena McGowan,
  • Darren J Creek

DOI
https://doi.org/10.7554/eLife.92990
Journal volume & issue
Vol. 13

Abstract

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New antimalarial drug candidates that act via novel mechanisms are urgently needed to combat malaria drug resistance. Here, we describe the multi-omic chemical validation of Plasmodium M1 alanyl metalloaminopeptidase as an attractive drug target using the selective inhibitor, MIPS2673. MIPS2673 demonstrated potent inhibition of recombinant Plasmodium falciparum (PfA-M1) and Plasmodium vivax (PvA-M1) M1 metalloaminopeptidases, with selectivity over other Plasmodium and human aminopeptidases, and displayed excellent in vitro antimalarial activity with no significant host cytotoxicity. Orthogonal label-free chemoproteomic methods based on thermal stability and limited proteolysis of whole parasite lysates revealed that MIPS2673 solely targets PfA-M1 in parasites, with limited proteolysis also enabling estimation of the binding site on PfA-M1 to within ~5 Å of that determined by X-ray crystallography. Finally, functional investigation by untargeted metabolomics demonstrated that MIPS2673 inhibits the key role of PfA-M1 in haemoglobin digestion. Combined, our unbiased multi-omic target deconvolution methods confirmed the on-target activity of MIPS2673, and validated selective inhibition of M1 alanyl metalloaminopeptidase as a promising antimalarial strategy.

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