eLife (Jun 2020)

A trans-eQTL network regulates osteoclast multinucleation and bone mass

  • Marie Pereira,
  • Jeong-Hun Ko,
  • John Logan,
  • Hayley Protheroe,
  • Kee-Beom Kim,
  • Amelia Li Min Tan,
  • Peter I Croucher,
  • Kwon-Sik Park,
  • Maxime Rotival,
  • Enrico Petretto,
  • JH Duncan Bassett,
  • Graham R Williams,
  • Jacques Behmoaras

DOI
https://doi.org/10.7554/eLife.55549
Journal volume & issue
Vol. 9

Abstract

Read online

Functional characterisation of cell-type-specific regulatory networks is key to establish a causal link between genetic variation and phenotype. The osteoclast offers a unique model for interrogating the contribution of co-regulated genes to in vivo phenotype as its multinucleation and resorption activities determine quantifiable skeletal traits. Here we took advantage of a trans-regulated gene network (MMnet, macrophage multinucleation network) which we found to be significantly enriched for GWAS variants associated with bone-related phenotypes. We found that the network hub gene Bcat1 and seven other co-regulated MMnet genes out of 13, regulate bone function. Specifically, global (Pik3cb-/-, Atp8b2+/-, Igsf8-/-, Eml1-/-, Appl2-/-, Deptor-/-) and myeloid-specific Slc40a1 knockout mice displayed abnormal bone phenotypes. We report opposing effects of MMnet genes on bone mass in mice and osteoclast multinucleation/resorption in humans with strong correlation between the two. These results identify MMnet as a functionally conserved network that regulates osteoclast multinucleation and bone mass.

Keywords