Scientific Data (Sep 2023)
Whole genomes from bacteria collected at diagnostic units around the world 2020
- Sidsel Nag,
- Gunhild Larsen,
- Judit Szarvas,
- Laura Elmlund Kohl Birkedahl,
- Gábor Máté Gulyás,
- Wojchiech Jakub Ciok,
- Timmie Mikkel Lagermann,
- Silva Tafaj,
- Susan Bradbury,
- Peter Collignon,
- Denise Daley,
- Victorien Dougnon,
- Kafayath Fabiyi,
- Boubacar Coulibaly,
- René Dembélé,
- Georgette Nikiema,
- Natama Magloire,
- Isidore Juste Ouindgueta,
- Zenat Zebin Hossain,
- Anowara Begum,
- Deyan Donchev,
- Mathew Diggle,
- LeeAnn Turnbull,
- Simon Lévesque,
- Livia Berlinger,
- Kirstine Kobberoe Sogaard,
- Paula Diaz Guevara,
- Carolina Duarte Valderrama,
- Panagiota Maikanti,
- Jana Amlerova,
- Pavel Drevinek,
- Jan Tkadlec,
- Milica Dilas,
- Achim Kaasch,
- Henrik Torkil Westh,
- Mohamed Azzedine Bachtarzi,
- Wahiba Amhis,
- Carolina Elisabeth Satán Salazar,
- JoséEduardo Villacis,
- Mária Angeles Dominguez Lúzon,
- Dámaris Berbel Palau,
- Claire Duployez,
- Maxime Paluche,
- Solomon Asante-Sefa,
- Mie Moller,
- Margaret Ip,
- Ivana Mareković,
- Agnes Pál-Sonnevend,
- Clementiza Elvezia Cocuzza,
- Asta Dambrauskiene,
- Alexandre Macanze,
- Anelsio Cossa,
- Inácio Mandomando,
- Philip Nwajiobi-Princewill,
- Iruka N. Okeke,
- Aderemi O. Kehinde,
- Ini Adebiyi,
- Ifeoluwa Akintayo,
- Oluwafemi Popoola,
- Anthony Onipede,
- Anita Blomfeldt,
- Nora Elisabeth Nyquist,
- Kiri Bocker,
- James Ussher,
- Amjad Ali,
- Nimat Ullah,
- Habibullah Khan,
- Natalie Weiler Gustafson,
- Ikhlas Jarrar,
- Arif Al-Hamad,
- Viravarn Luvira,
- Wantana Paveenkittiporn,
- Irmak Baran,
- James C. L. Mwansa,
- Linda Sikakwa,
- Kaunda Yamba,
- Rene Sjogren Hendriksen,
- Frank Moller Aarestrup
Affiliations
- Sidsel Nag
- National Food Institute, Technical University of Denmark, Kemitorvet, Kgs
- Gunhild Larsen
- National Food Institute, Technical University of Denmark, Kemitorvet, Kgs
- Judit Szarvas
- National Food Institute, Technical University of Denmark, Kemitorvet, Kgs
- Laura Elmlund Kohl Birkedahl
- National Food Institute, Technical University of Denmark, Kemitorvet, Kgs
- Gábor Máté Gulyás
- National Food Institute, Technical University of Denmark, Kemitorvet, Kgs
- Wojchiech Jakub Ciok
- National Food Institute, Technical University of Denmark, Kemitorvet, Kgs
- Timmie Mikkel Lagermann
- National Food Institute, Technical University of Denmark, Kemitorvet, Kgs
- Silva Tafaj
- Microbiology Department, University Hospital “Shefqet Ndroqi”, Rruga Dr. Shefqet Ndroqi. Sauk
- Susan Bradbury
- Microbiology Department, Canberra Hospital, Gilmore Cresent
- Peter Collignon
- Microbiology Department, Canberra Hospital, Gilmore Cresent
- Denise Daley
- Department of Microbiology, PathWest Laboratory Medicine, Fiona Stanley Hospital
- Victorien Dougnon
- Research Unit in Applied Microbiology and Pharmacology of Natural Substances, Polytechnic School of Abomey-Calavi, University of Abomey-Calavi, 01 PO Box, Abomey-Calavi
- Kafayath Fabiyi
- Research Unit in Applied Microbiology and Pharmacology of Natural Substances, Polytechnic School of Abomey-Calavi, University of Abomey-Calavi, 01 PO Box, Abomey-Calavi
- Boubacar Coulibaly
- Department of Laboratory, Nouna Health Research Centre, Rue Namory Keita
- René Dembélé
- Training and Research Unit in Applied Sciences and Technologies/Biochemistry-microbiology, University of Dedougou
- Georgette Nikiema
- Training and Research Unit in Applied Sciences and Technologies/Biochemistry-microbiology, University of Dedougou
- Natama Magloire
- Clinical Research Unit of Nanoro, National Institutes of Medical Research
- Isidore Juste Ouindgueta
- Department, University of Joseph KI-ZERBO, Street
- Zenat Zebin Hossain
- Department of Microbiology, University of Dhaka
- Anowara Begum
- Department of Microbiology, University of Dhaka
- Deyan Donchev
- Clinical Laboratory of Microbiology and Virology, University Hospital “Lozenetz”, Str. Kozyak 1, Sofia
- Mathew Diggle
- Alberta Precision Laboratories
- LeeAnn Turnbull
- Alberta Precision Laboratories
- Simon Lévesque
- Service de microbiologie, Centre Integré Universitaire de Santé et de services sociaux de l’Estrie - Centre Hospitalier Universitaire de Sherbrooke
- Livia Berlinger
- Department, Bioanalytica AG
- Kirstine Kobberoe Sogaard
- Division of Clinical Bacteriology and Mycology, University Hospital Basel
- Paula Diaz Guevara
- Microbiology Group, Instituto Nacional de Salud
- Carolina Duarte Valderrama
- Microbiology Group, Instituto Nacional de Salud
- Panagiota Maikanti
- Charalampous, Microbiology Department, National Reference Laboratory for Antimicrobial Resistance Surveillance, Nicosia General Hospital, 215, Paleos Dromos Lefkosia-Lemesos str., Strovolos
- Jana Amlerova
- Department of Microbiology, University Hospital in Plzen
- Pavel Drevinek
- Department of Medical Microbiology, Motol University Hospital
- Jan Tkadlec
- Department of Medical Microbiology, Motol University Hospital
- Milica Dilas
- Otto-von-Guericke University
- Achim Kaasch
- Otto-von-Guericke University
- Henrik Torkil Westh
- Klinisk Mikrobiologisk Afdeling, Hvidovre Hospital, Kettegårds Allé
- Mohamed Azzedine Bachtarzi
- Laboratoire de Microbiologie Clinique, Centre Hospitalo-universitaire
- Wahiba Amhis
- Laboratoire de Microbiologie Clinique, Centre Hospitalo-universitaire
- Carolina Elisabeth Satán Salazar
- National Reference Center for Antimicrobial Resistance, National Institute of Public Health Research “Dr. Leopoldo Izquieta Pérez”
- JoséEduardo Villacis
- Centro de Investigación para la Salud en América Latina (CISeAL), Pontificia Universidad Católica del Ecuador
- Mária Angeles Dominguez Lúzon
- Department of Pathology and Experimental Therapy, Universitat de Barcelona
- Dámaris Berbel Palau
- Microbiology Department, Hospital de Bellvitge
- Claire Duployez
- Institute of Microbiology, Centre Hospitalier Universitaire de Lille, Rue du Pr. Jules Leclercq
- Maxime Paluche
- Bacteriology laboratory, Centre hospitalier de Valenciennes, Avenue Désandrouin
- Solomon Asante-Sefa
- Sekondi Public Health Laboratory, Ghana Health Service, Effia Nkwanta Regional Hospital, Effia Nkwanta Regional Hospital
- Mie Moller
- Dronning Ingrids Hospital
- Margaret Ip
- Chinese University of Hong Kong
- Ivana Mareković
- Department of Clinical and Molecular Microbiology, University Hospital Centre Zagreb
- Agnes Pál-Sonnevend
- Medical Microbiology and Immunology, University of Pecs Medical School
- Clementiza Elvezia Cocuzza
- Department of Medicine and Surgery, University of Milano-Bicocca
- Asta Dambrauskiene
- Laboratory Medicine Department, Hospital of Lithuanian University of Health Sciences Kauno klinikos
- Alexandre Macanze
- Centro de Investigação em Saúde de Manhiça
- Anelsio Cossa
- Centro de Investigação em Saúde de Manhiça
- Inácio Mandomando
- Centro de Investigação em Saúde de Manhiça
- Philip Nwajiobi-Princewill
- National Hospital Abuja
- Iruka N. Okeke
- Faculty of Pharmacy, University of Ibadan
- Aderemi O. Kehinde
- College of Medicine, University of Ibadan
- Ini Adebiyi
- Faculty of Pharmacy, University of Ibadan
- Ifeoluwa Akintayo
- College of Medicine, University of Ibadan
- Oluwafemi Popoola
- College of Medicine, University of Ibadan
- Anthony Onipede
- Obafemi Awolowo University
- Anita Blomfeldt
- Department of Microbiology and Infection Control, Akershus University Hospital
- Nora Elisabeth Nyquist
- Department of Microbiology and Infection Control, Akershus University Hospital
- Kiri Bocker
- Southern Community Laboratories, University of Otago
- James Ussher
- Southern Community Laboratories, University of Otago
- Amjad Ali
- Department of Industrial Biotechnology, Atta-ur-Rahman School of Applied Biosciences, National University of Sciences and Technology (NUST)
- Nimat Ullah
- Department of Industrial Biotechnology, Atta-ur-Rahman School of Applied Biosciences, National University of Sciences and Technology (NUST)
- Habibullah Khan
- Molecular Diagnostic Section, Khyber Teaching Hospital (KTH)
- Natalie Weiler Gustafson
- Departamento de Bacteriologia, Laboratorio Central de Salud Publico, Avenida Venezuela y Tte Escurra
- Ikhlas Jarrar
- Basic Medical Sciences Department, Arab American University, AAUP st., Zababdeh
- Arif Al-Hamad
- Division of Clinical Microbiology, Qatif Central Hospital
- Viravarn Luvira
- Department of Clinical Tropical Medicine, Faculty of Tropical Medicine, Mahidol University
- Wantana Paveenkittiporn
- Department of Medical Sciences, National Institute of Health
- Irmak Baran
- Medical Microbiology Department, Karadeniz Technical University Farabi Hospital, Farabi Hastanesi
- James C. L. Mwansa
- Lusaka Apex Medical School
- Linda Sikakwa
- Levy Mwanawasa Teaching Hospital
- Kaunda Yamba
- University Teaching Hospital
- Rene Sjogren Hendriksen
- National Food Institute, Technical University of Denmark, Kemitorvet, Kgs
- Frank Moller Aarestrup
- National Food Institute, Technical University of Denmark, Kemitorvet, Kgs
- DOI
- https://doi.org/10.1038/s41597-023-02502-7
- Journal volume & issue
-
Vol. 10,
no. 1
pp. 1 – 10
Abstract
Abstract The Two Weeks in the World research project has resulted in a dataset of 3087 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units in 35 countries around the world during 2020. A relational database is available with metadata and summary data from selected bioinformatic analysis, such as species prediction and identification of acquired resistance genes.
