Nature Communications (Dec 2019)

In silico prediction of high-resolution Hi-C interaction matrices

  • Shilu Zhang,
  • Deborah Chasman,
  • Sara Knaack,
  • Sushmita Roy

DOI
https://doi.org/10.1038/s41467-019-13423-8
Journal volume & issue
Vol. 10, no. 1
pp. 1 – 18

Abstract

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Existing computational approaches to predict long-range regulatory interactions do not fully exploit high-resolution Hi-C datasets. Here the authors present a Random Forests regression-based approach to predict high-resolution Hi-C counts using one-dimensional regulatory genomic signals.