iScience (Apr 2023)
A five-safes approach to a secure and scalable genomics data repository
- Chih Chuan Shih,
- Jieqi Chen,
- Ai Shan Lee,
- Nicolas Bertin,
- Maxime Hebrard,
- Chiea Chuen Khor,
- Zheng Li,
- Joanna Hui Juan Tan,
- Wee Yang Meah,
- Su Qin Peh,
- Shi Qi Mok,
- Kar Seng Sim,
- Jianjun Liu,
- Ling Wang,
- Eleanor Wong,
- Jingmei Li,
- Aung Tin,
- Ching-Yu Cheng,
- Chew-Kiat Heng,
- Jian-Min Yuan,
- Woon-Puay Koh,
- Seang Mei Saw,
- Yechiel Friedlander,
- Xueling Sim,
- Jin Fang Chai,
- Yap Seng Chong,
- Sonia Davila,
- Liuh Ling Goh,
- Eng Sing Lee,
- Tien Yin Wong,
- Neerja Karnani,
- Khai Pang Leong,
- Khung Keong Yeo,
- John C. Chambers,
- Su Chi Lim,
- Rick Siow Mong Goh,
- Patrick Tan,
- Rajkumar Dorajoo
Affiliations
- Chih Chuan Shih
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore; Corresponding author
- Jieqi Chen
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore
- Ai Shan Lee
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore
- Nicolas Bertin
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore
- Maxime Hebrard
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore
- Chiea Chuen Khor
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore; Singapore Eye Research Institute, Singapore National Eye Centre, Singapore, Republic of Singapore
- Zheng Li
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore
- Joanna Hui Juan Tan
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore
- Wee Yang Meah
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore
- Su Qin Peh
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore
- Shi Qi Mok
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore
- Kar Seng Sim
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore
- Jianjun Liu
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore; Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Republic of Singapore
- Ling Wang
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore
- Eleanor Wong
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore
- Jingmei Li
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore
- Aung Tin
- Singapore Eye Research Institute, Singapore National Eye Centre, Singapore, Republic of Singapore; Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Republic of Singapore; Duke-NUS Medical School, Singapore, Republic of Singapore; Singapore National Eye Centre, Singapore, Republic of Singapore
- Ching-Yu Cheng
- Singapore Eye Research Institute, Singapore National Eye Centre, Singapore, Republic of Singapore; Duke-NUS Medical School, Singapore, Republic of Singapore
- Chew-Kiat Heng
- Department of Paediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Republic of Singapore; Khoo Teck Puat - National University Children’s Medical Institute, National University Health System, Singapore, Republic of Singapore
- Jian-Min Yuan
- Department of Epidemiology, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA, USA; UPMC Hillman Cancer Center, University of Pittsburgh, Pittsburgh, PA, USA
- Woon-Puay Koh
- Healthy Longevity Translational Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Republic of Singapore; Singapore Institute for Clinical Sciences (SICS), Agency for Science, Technology and Research (A∗STAR), Brenner Centre for Molecular Medicine, 30 Medical Drive, Singapore 117609, Republic of Singapore
- Seang Mei Saw
- Singapore Eye Research Institute, Singapore National Eye Centre, Singapore, Republic of Singapore; Duke-NUS Medical School, Singapore, Republic of Singapore; Saw Swee Hock School of Public Health, National University of Singapore, Singapore, Republic of Singapore
- Yechiel Friedlander
- Braun School of Public Health, Hebrew University of Jerusalem, Jerusalem, Israel
- Xueling Sim
- Saw Swee Hock School of Public Health, National University of Singapore, Singapore, Republic of Singapore
- Jin Fang Chai
- Saw Swee Hock School of Public Health, National University of Singapore, Singapore, Republic of Singapore
- Yap Seng Chong
- Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Republic of Singapore; Singapore Institute for Clinical Sciences (SICS), Agency for Science, Technology and Research (A∗STAR), Brenner Centre for Molecular Medicine, 30 Medical Drive, Singapore 117609, Republic of Singapore
- Sonia Davila
- SingHealth Duke-NUS Institute of Precision Medicine, Singapore, Republic of Singapore
- Liuh Ling Goh
- Molecular Diagnostic Laboratory, Tan Tock Seng Hospital, Singapore, Republic of Singapore
- Eng Sing Lee
- Clinical Research Unit, National Healthcare Group Polyclinics, Singapore, Republic of Singapore; Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Republic of Singapore
- Tien Yin Wong
- Singapore Eye Research Institute, Singapore National Eye Centre, Singapore, Republic of Singapore; Duke-NUS Medical School, Singapore, Republic of Singapore; Singapore National Eye Centre, Singapore, Republic of Singapore
- Neerja Karnani
- Singapore Institute for Clinical Sciences (SICS), Agency for Science, Technology and Research (A∗STAR), Brenner Centre for Molecular Medicine, 30 Medical Drive, Singapore 117609, Republic of Singapore; Bioinformatics Institute (BII), Agency for Science, Technology and Research (A∗STAR), 30 Biopolis Street, Matrix #07-01, Singapore 138671, Republic of Singapore
- Khai Pang Leong
- Personalised Medicine Service, Tan Tock Seng Hospital, Singapore, Republic of Singapore
- Khung Keong Yeo
- Duke-NUS Medical School, Singapore, Republic of Singapore; SingHealth Duke-NUS Institute of Precision Medicine, Singapore, Republic of Singapore; Department of Cardiology, National Heart Centre Singapore, Singapore, Republic of Singapore
- John C. Chambers
- Precision Health Research, Singapore, Republic of Singapore; Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Republic of Singapore; School of Public Health, Imperial College London, London, UK
- Su Chi Lim
- Saw Swee Hock School of Public Health, National University of Singapore, Singapore, Republic of Singapore; Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Republic of Singapore; Clinical Research Unit, Khoo Teck Puat Hospital, Singapore, Republic of Singapore; Diabetes Centre, Admiralty Medical Centre, Singapore, Republic of Singapore
- Rick Siow Mong Goh
- Institute of High Performance Computing (IHPC), Agency for Science, Technology and Research (A∗STAR), 1 Fusionopolis Way, #16-16 Connexis (North Tower), Singapore 138632, Republic of Singapore
- Patrick Tan
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore; Duke-NUS Medical School, Singapore, Republic of Singapore; Precision Health Research, Singapore, Republic of Singapore; Cancer Science Institute of Singapore, National University of Singapore, Singapore, Republic of Singapore
- Rajkumar Dorajoo
- Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A∗STAR), 60 Biopolis Street, Genome #02-01, Singapore 138672, Republic of Singapore; Duke-NUS Medical School, Singapore, Republic of Singapore; Corresponding author
- Journal volume & issue
-
Vol. 26,
no. 4
p. 106546
Abstract
Summary: Genomic researchers increasingly utilize commercial cloud service providers (CSPs) to manage data and analytics needs. CSPs allow researchers to grow Information Technology (IT) infrastructure on demand to overcome bottlenecks when combining large datasets. However, without adequate security controls, the risk of unauthorized access may be higher for data stored on the cloud. Additionally, regulators are mandating data access patterns and specific security protocols for the storage and use of genomic data. While CSP provides tools for security and regulatory compliance, building the necessary controls required for cloud solutions is not trivial. Research Assets Provisioning and Tracking Online Repository (RAPTOR) by the Genome Institute of Singapore is a cloud-native genomics data repository and analytics platform that implements a “five-safes” framework to provide security and governance controls to data contributors and users, leveraging CSP for sharing and analysis of genomic datasets without the risk of security breaches or running afoul of regulations.