Proteome dataset of chili pepper plant (Capsicum frutescens) infested by broad mite (Polyphagotarsonemus latus)
Sachin S. Patavardhan,
Kriti Awasthi,
Suhasini Suresh,
Pratigya Subba,
Mohd Altaf Najar,
Leo D'Souza,
Shashi Kiran Nivas,
Thottethodi Subrahmanya Keshava Prasad
Affiliations
Sachin S. Patavardhan
Laboratory of Applied Biology, St Aloysius College (Autonomous), Mangalore, India; Department of Biosciences, Mangalore University, Mangalore, India
Kriti Awasthi
Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, India
Suhasini Suresh
Laboratory of Applied Biology, St Aloysius College (Autonomous), Mangalore, India
Pratigya Subba
Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, India
Mohd Altaf Najar
Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, India
Leo D'Souza
Laboratory of Applied Biology, St Aloysius College (Autonomous), Mangalore, India
Shashi Kiran Nivas
Laboratory of Applied Biology, St Aloysius College (Autonomous), Mangalore, India; Corresponding authors.
Thottethodi Subrahmanya Keshava Prasad
Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore, India; Corresponding authors.
The dataset presented in this article is associated with the TMT (Tandem mass tag) labeled proteomics of chili pepper plant (Capsicum frutescens) infested by a broad mite (Polyphagotarsonemus latus). Data was captured using a nano liquid chromatography system coupled with high-resolution Orbitrap FusionTribridmass spectrometer. Proteomics data was analyzed using the Proteome Discoverer version 2.4 tool using MASCOT and SequestHT algorithms. We have identified a total of 5,807 proteins supported by 48,555 unique peptides and 1,279,655 peptide-spectrum matches. Individually, 5,186 proteins were detected in healthy leaf samples, 5,193 in infested leaf sample, 5,194 proteins in healthy meristem sample, and 5,196 proteins in infested meristem samples. Datasets obtained from reciprocal blast against the Arabidopsis thaliana proteome database enabled the prediction of protein-protein interactions, and subcellular localization of differentially expressed proteins, which are also included in this article. Data presented in this article has been deposited in the ProteomeXchange Consortium via the PRIDE repository, which can be accessed through the accession ID: PXD018653.
