BioTechniques (Oct 1998)

Quantitative Determination of CMV DNA Using a Combination of Competitive PCR Amplification and Sandwich Hybridization

  • I. Alexandre,
  • N. Zammatteo,
  • I. Ernest,
  • J.-M. Ladriere,
  • L. Le,
  • S. Hamels,
  • N. Chandelier,
  • B. Vipond,
  • J. Remacle

DOI
https://doi.org/10.2144/98254dt07
Journal volume & issue
Vol. 25, no. 4
pp. 676 – 683

Abstract

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A quantitative PCR method is proposed that combines the use of a competitive internal standard with the sandwich hybridization of the products. The variability of the PCR efficiency was corrected using a specifically designed internal standard, competitive not only for the PCR amplification, but also for the hybridization on capture probes fixed onto microwells. The design of such standard gave a dynamic range extending from 30–1 million copies of target DNA when the internal standard copy number was fixed to 1000 using a simple colorimetric detection. The assay was independent from the number of PCR cycles, which indicates a true competition between the standard and the template DNA. The assay was developed for a cytomegalovirus (CMV) DNA sequence and is illustrated by the quantification of CMV in a culture sample.