IUCrJ (Sep 2019)

Ligand pathways in neuroglobin revealed by low-temperature photodissociation and docking experiments

  • Chiara Ardiccioni,
  • Alessandro Arcovito,
  • Stefano Della Longa,
  • Peter van der Linden,
  • Dominique Bourgeois,
  • Martin Weik,
  • Linda Celeste Montemiglio,
  • Carmelinda Savino,
  • Giovanna Avella,
  • Cécile Exertier,
  • Philippe Carpentier,
  • Thierry Prangé,
  • Maurizio Brunori,
  • Nathalie Colloc'h,
  • Beatrice Vallone

DOI
https://doi.org/10.1107/S2052252519008157
Journal volume & issue
Vol. 6, no. 5
pp. 832 – 842

Abstract

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A combined biophysical approach was applied to map gas-docking sites within murine neuroglobin (Ngb), revealing snapshots of events that might govern activity and dynamics in this unique hexacoordinate globin, which is most likely to be involved in gas-sensing in the central nervous system and for which a precise mechanism of action remains to be elucidated. The application of UV–visible microspectroscopy in crystallo, solution X-ray absorption near-edge spectroscopy and X-ray diffraction experiments at 15–40 K provided the structural characterization of an Ngb photolytic intermediate by cryo-trapping and allowed direct observation of the relocation of carbon monoxide within the distal heme pocket after photodissociation. Moreover, X-ray diffraction at 100 K under a high pressure of dioxygen, a physiological ligand of Ngb, unravelled the existence of a storage site for O2 in Ngb which coincides with Xe-III, a previously described docking site for xenon or krypton. Notably, no other secondary sites were observed under our experimental conditions.

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