Journal of Lipid Research (Sep 2024)
The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data
- Dominik Kopczynski,
- Christer S. Ejsing,
- Jeffrey G. McDonald,
- Takeshi Bamba,
- Erin S. Baker,
- Justine Bertrand-Michel,
- Britta Brügger,
- Cristina Coman,
- Shane R. Ellis,
- Timothy J. Garrett,
- William J. Griffiths,
- Xue Li Guan,
- Xianlin Han,
- Marcus Höring,
- Michal Holčapek,
- Nils Hoffmann,
- Kevin Huynh,
- Rainer Lehmann,
- Jace W. Jones,
- Rima Kaddurah-Daouk,
- Harald C. Köfeler,
- Peter J. Meikle,
- Thomas O. Metz,
- Valerie B. O’Donnell,
- Daisuke Saigusa,
- Dominik Schwudke,
- Andrej Shevchenko,
- Federico Torta,
- Juan Antonio Vizcaíno,
- Ruth Welti,
- Markus R. Wenk,
- Denise Wolrab,
- Yu Xia,
- Kim Ekroos,
- Robert Ahrends,
- Gerhard Liebisch
Affiliations
- Dominik Kopczynski
- Department of Analytical Chemistry, Faculty of Chemistry, University of Vienna, Vienna, Austria
- Christer S. Ejsing
- Department of Biochemistry and Molecular Biology, VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Odense, Denmark; Cell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany
- Jeffrey G. McDonald
- Center for Human Nutrition and Department of Molecular Genetics, UT Southwestern Medical Center, Dallas, Texas, USA
- Takeshi Bamba
- Division of Metabolomics/Mass Spectrometry Center, Medical Research Center for High Depth Omics, Medical Institute of Bioregulation, Kyushu University, Fukuoka, Japan
- Erin S. Baker
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
- Justine Bertrand-Michel
- MetaboHUB-Metatoul, National Infrastructure of Metabolomics and Fluxomics, Inserm I2MC, Toulouse, France
- Britta Brügger
- Heidelberg University Biochemistry Center (BZH), University of Heidelberg, Heidelberg, Germany
- Cristina Coman
- Department of Analytical Chemistry, Faculty of Chemistry, University of Vienna, Vienna, Austria
- Shane R. Ellis
- Molecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, NSW, Australia
- Timothy J. Garrett
- Department of Pathology, Immunology and Laboratory Medicine, University of Florida, Gainesville, Florida, USA
- William J. Griffiths
- Swansea University Medical School, Swansea, Wales, UK
- Xue Li Guan
- Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Singapore
- Xianlin Han
- Barshop Institute for Longevity and Aging Studies, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA
- Marcus Höring
- Institute of Clinical Chemistry and Laboratory Medicine, University of Regensburg, Regensburg, Germany
- Michal Holčapek
- Department of Analytical Chemistry, Faculty of Chemical Technology, University of Pardubice, Pardubice, Czech Republic
- Nils Hoffmann
- Institute for Bio- and Geosciences (IBG-5), Forschungszentrum Jülich GmbH, Jülich, Germany
- Kevin Huynh
- Baker Heart and Diabetes Institute, Melbourne, VIC, Australia; Department of Cardiovascular Research Translation and Implementation, La Trobe University, Bundoora, VIC, Australia
- Rainer Lehmann
- Institute for Clinical Chemistry and Pathobiochemistry, Department for Diagnostic Laboratory Medicine, University Hospital Tuebingen, Tuebingen, Germany
- Jace W. Jones
- Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, Maryland, USA
- Rima Kaddurah-Daouk
- Department of Psychiatry and Behavioural Sciences, Duke University, Durham, North Carolina, USA; Duke Institute of Brain Sciences, Duke University, Durham, North Carolina, USA; Department of Medicine, Duke University, Durham, North Carolina, USA
- Harald C. Köfeler
- Core Facility Mass Spectrometry and Lipidomics, ZMF, Medical University of Graz, Graz, Austria
- Peter J. Meikle
- Baker Heart and Diabetes Institute, Melbourne, VIC, Australia; Department of Cardiovascular Research Translation and Implementation, La Trobe University, Bundoora, VIC, Australia
- Thomas O. Metz
- Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA
- Valerie B. O’Donnell
- Systems Immunity Research Institute, School of Medicine, Cardiff University, Cardiff, UK
- Daisuke Saigusa
- Laboratory of Biomedical and Analytical Sciences, Faculty of Pharma-Science, Teikyo University, Tokyo, Japan
- Dominik Schwudke
- Division of Bioanalytical Chemistry, Research Center Borstel – Leibniz Lung Center, Borstel, Germany; German Center for Infection Research, Thematic Translational Unit Tuberculosis, Partner Site Hamburg-Lübeck-Borstel-Riems, Germany; German Center for Lung Research (DZL), Airway Research Center North (ARCN), Borstel, Germany
- Andrej Shevchenko
- Max-Planck-Institute of Molecular Cell Biology and Genetics, Dresden, Germany
- Federico Torta
- Singapore Lipidomics Incubator (SLING), Department of Biochemistry, YLL School of Medicine, National University of Singapore, Singapore, Singapore; Signature Research Program in Cardiovascular and Metabolic Disorders, Duke-NUS Medical School, Singapore, Singapore
- Juan Antonio Vizcaíno
- European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
- Ruth Welti
- Kansas Lipidomics Research Center, Division of Biology, Kansas State University, Manhattan, Kansas, USA
- Markus R. Wenk
- Singapore Lipidomics Incubator (SLING), Department of Biochemistry, YLL School of Medicine, National University of Singapore, Singapore, Singapore
- Denise Wolrab
- Department of Analytical Chemistry, Faculty of Chemistry, University of Vienna, Vienna, Austria
- Yu Xia
- MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Department of Chemistry, Tsinghua University, Beijing, China
- Kim Ekroos
- Lipidomics Consulting Ltd., Esbo, Finland; For correspondence: Gerhard Liebisch; Robert Ahrends; Kim Ekroos
- Robert Ahrends
- Department of Analytical Chemistry, Faculty of Chemistry, University of Vienna, Vienna, Austria; For correspondence: Gerhard Liebisch; Robert Ahrends; Kim Ekroos
- Gerhard Liebisch
- Institute of Clinical Chemistry and Laboratory Medicine, University of Regensburg, Regensburg, Germany; For correspondence: Gerhard Liebisch; Robert Ahrends; Kim Ekroos
- Journal volume & issue
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Vol. 65,
no. 9
p. 100621
Abstract
The rapid increase in lipidomic studies has led to a collaborative effort within the community to establish standards and criteria for producing, documenting, and disseminating data. Creating a dynamic easy-to-use checklist that condenses key information about lipidomic experiments into common terminology will enhance the field's consistency, comparability, and repeatability. Here, we describe the structure and rationale of the established Lipidomics Minimal Reporting Checklist to increase transparency in lipidomics research.
