eLife (Jun 2022)
Projected resurgence of COVID-19 in the United States in July—December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccination
- Shaun Truelove,
- Claire P Smith,
- Michelle Qin,
- Luke C Mullany,
- Rebecca K Borchering,
- Justin Lessler,
- Katriona Shea,
- Emily Howerton,
- Lucie Contamin,
- John Levander,
- Jessica Kerr,
- Harry Hochheiser,
- Matt Kinsey,
- Kate Tallaksen,
- Shelby Wilson,
- Lauren Shin,
- Kaitlin Rainwater-Lovett,
- Joseph C Lemairtre,
- Juan Dent,
- Joshua Kaminsky,
- Elizabeth C Lee,
- Javier Perez-Saez,
- Alison Hill,
- Dean Karlen,
- Matteo Chinazzi,
- Jessica T Davis,
- Kunpeng Mu,
- Xinyue Xiong,
- Ana Pastore y Piontti,
- Alessandro Vespignani,
- Ajitesh Srivastava,
- Przemyslaw Porebski,
- Srinivasan Venkatramanan,
- Aniruddha Adiga,
- Bryan Lewis,
- Brian Klahn,
- Joseph Outten,
- Mark Orr,
- Galen Harrison,
- Benjamin Hurt,
- Jiangzhuo Chen,
- Anil Vullikanti,
- Madhav Marathe,
- Stefan Hoops,
- Parantapa Bhattacharya,
- Dustin Machi,
- Shi Chen,
- Rajib Paul,
- Daniel Janies,
- Jean-Claude Thill,
- Marta Galanti,
- Teresa K Yamana,
- Sen Pei,
- Jeffrey L Shaman,
- Jessica M Healy,
- Rachel B Slayton,
- Matthew Biggerstaff,
- Michael A Johansson,
- Michael C Runge,
- Cecile Viboud
Affiliations
- Shaun Truelove
- ORCiD
- Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University, Baltimore, United States
- Claire P Smith
- Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University, Baltimore, United States
- Michelle Qin
- Harvard University, Cambridge, Massachusetts, United States
- Luke C Mullany
- Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University, Baltimore, United States; Johns Hopkins University Applied Physics Laboratory, Laurel, United States
- Rebecca K Borchering
- ORCiD
- Pennsylvania State University, University Park, United States
- Justin Lessler
- University of North Carolina at Chapel Hill, Chapel Hill, United States
- Katriona Shea
- Pennsylvania State University, University Park, United States
- Emily Howerton
- Pennsylvania State University, University Park, United States
- Lucie Contamin
- University of Pittsburgh, Pittsburgh, United States
- John Levander
- University of Pittsburgh, Pittsburgh, United States
- Jessica Kerr
- University of Pittsburgh, Pittsburgh, United States
- Harry Hochheiser
- ORCiD
- University of Pittsburgh, Pittsburgh, United States
- Matt Kinsey
- Johns Hopkins University Applied Physics Laboratory, Laurel, United States
- Kate Tallaksen
- Johns Hopkins University Applied Physics Laboratory, Laurel, United States
- Shelby Wilson
- Johns Hopkins University Applied Physics Laboratory, Laurel, United States
- Lauren Shin
- Johns Hopkins University Applied Physics Laboratory, Laurel, United States
- Kaitlin Rainwater-Lovett
- ORCiD
- Johns Hopkins University Applied Physics Laboratory, Laurel, United States
- Joseph C Lemairtre
- École polytechnique fédérale de Lausanne, Lausanne, Switzerland
- Juan Dent
- ORCiD
- Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University, Baltimore, United States
- Joshua Kaminsky
- Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University, Baltimore, United States
- Elizabeth C Lee
- Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University, Baltimore, United States
- Javier Perez-Saez
- Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University, Baltimore, United States
- Alison Hill
- Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University, Baltimore, United States
- Dean Karlen
- University of Victoria, Victoria, Canada
- Matteo Chinazzi
- Northeastern University, Boston, United States
- Jessica T Davis
- Northeastern University, Boston, United States
- Kunpeng Mu
- Northeastern University, Boston, United States
- Xinyue Xiong
- Northeastern University, Boston, United States
- Ana Pastore y Piontti
- Northeastern University, Boston, United States
- Alessandro Vespignani
- Northeastern University, Boston, United States
- Ajitesh Srivastava
- University of Southern California, Los Angeles, United States
- Przemyslaw Porebski
- ORCiD
- University of Virginia, Charlottesville, United States
- Srinivasan Venkatramanan
- University of Virginia, Charlottesville, United States
- Aniruddha Adiga
- University of Virginia, Charlottesville, United States
- Bryan Lewis
- ORCiD
- University of Virginia, Charlottesville, United States
- Brian Klahn
- University of Virginia, Charlottesville, United States
- Joseph Outten
- University of Virginia, Charlottesville, United States
- Mark Orr
- University of Virginia, Charlottesville, United States
- Galen Harrison
- University of Virginia, Charlottesville, United States
- Benjamin Hurt
- University of Virginia, Charlottesville, United States
- Jiangzhuo Chen
- University of Virginia, Charlottesville, United States
- Anil Vullikanti
- University of Virginia, Charlottesville, United States
- Madhav Marathe
- University of Virginia, Charlottesville, United States
- Stefan Hoops
- University of Virginia, Charlottesville, United States
- Parantapa Bhattacharya
- University of Virginia, Charlottesville, United States
- Dustin Machi
- University of Virginia, Charlottesville, United States
- Shi Chen
- University of North Carolina at Charlotte, Charlotte, United States
- Rajib Paul
- University of North Carolina at Charlotte, Charlotte, United States
- Daniel Janies
- University of North Carolina at Charlotte, Charlotte, United States
- Jean-Claude Thill
- ORCiD
- University of North Carolina at Charlotte, Charlotte, United States
- Marta Galanti
- ORCiD
- Columbia University, New York, United States
- Teresa K Yamana
- ORCiD
- Columbia University, New York, United States
- Sen Pei
- ORCiD
- Columbia University, New York, United States
- Jeffrey L Shaman
- ORCiD
- Columbia University, New York, United States
- Jessica M Healy
- CDC COVID-19 Response Team, Atlanta, United States
- Rachel B Slayton
- CDC COVID-19 Response Team, Atlanta, United States
- Matthew Biggerstaff
- CDC COVID-19 Response Team, Atlanta, United States
- Michael A Johansson
- CDC COVID-19 Response Team, Atlanta, United States
- Michael C Runge
- ORCiD
- United States Geological Survey, Laurel, United States
- Cecile Viboud
- ORCiD
- Fogarty International Center, National Institutes of Health, Bethesda, United States
- DOI
- https://doi.org/10.7554/eLife.73584
- Journal volume & issue
-
Vol. 11
Abstract
In Spring 2021, the highly transmissible SARS-CoV-2 Delta variant began to cause increases in cases, hospitalizations, and deaths in parts of the United States. At the time, with slowed vaccination uptake, this novel variant was expected to increase the risk of pandemic resurgence in the US in summer and fall 2021. As part of the COVID-19 Scenario Modeling Hub, an ensemble of nine mechanistic models produced 6-month scenario projections for July–December 2021 for the United States. These projections estimated substantial resurgences of COVID-19 across the US resulting from the more transmissible Delta variant, projected to occur across most of the US, coinciding with school and business reopening. The scenarios revealed that reaching higher vaccine coverage in July–December 2021 reduced the size and duration of the projected resurgence substantially, with the expected impacts was largely concentrated in a subset of states with lower vaccination coverage. Despite accurate projection of COVID-19 surges occurring and timing, the magnitude was substantially underestimated 2021 by the models compared with the of the reported cases, hospitalizations, and deaths occurring during July–December, highlighting the continued challenges to predict the evolving COVID-19 pandemic. Vaccination uptake remains critical to limiting transmission and disease, particularly in states with lower vaccination coverage. Higher vaccination goals at the onset of the surge of the new variant were estimated to avert over 1.5 million cases and 21,000 deaths, although may have had even greater impacts, considering the underestimated resurgence magnitude from the model.
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