Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management
Stefania Savoi,
Panagiotis Arapitsas,
Éric Duchêne,
Maria Nikolantonaki,
Ignacio Ontañón,
Silvia Carlin,
Florian Schwander,
Régis D. Gougeon,
António César Silva Ferreira,
Georgios Theodoridis,
Reinhard Töpfer,
Urska Vrhovsek,
Anne-Francoise Adam-Blondon,
Mario Pezzotti,
Fulvio Mattivi
Affiliations
Stefania Savoi
UMR AGAP, Montpellier University, CIRAD, INRAE, Institut Agro-Montpellier SupAgro, 34060 Montpellier, France
Panagiotis Arapitsas
Department of Food Quality and Nutrition, Edmund Mach Foundation, Research and Innovation Centre, Via Edmund Mach 1, 38010 San Michele all’Adige, Italy
Éric Duchêne
SVQV, University of Strasbourg, INRAE, F-68000 Colmar, France
Maria Nikolantonaki
UMR PAM Université de Bourgogne/Agro Sup Dijon, Institut Universitaire de la Vigne et du Vin, Jules Guyot, F-21000 Dijon, France
Ignacio Ontañón
Laboratorio de Análisis Del Aroma y Enología, Departamento de Química Analítica, Facultad de Ciencias, Instituto Agroalimentario de Aragón (IA2), Universidad de Zaragoza, Calle de Pedro Cerbuna 12, 50009 Zaragoza, Spain
Silvia Carlin
Department of Food Quality and Nutrition, Edmund Mach Foundation, Research and Innovation Centre, Via Edmund Mach 1, 38010 San Michele all’Adige, Italy
Florian Schwander
Julius Kühn-Institute, Institute for Grapevine Breeding Geilweilerhof, D-76833 Siebeldingen, Germany
Régis D. Gougeon
UMR PAM Université de Bourgogne/Agro Sup Dijon, Institut Universitaire de la Vigne et du Vin, Jules Guyot, F-21000 Dijon, France
António César Silva Ferreira
CBQF—Centro de Biotecnologia e Química Fina.—Laboratório Associado, Escola Superior de Biotecnologia, Universidade Católica Portuguesa, Rua de Diogo Botelho, 1327, 4169-005 Porto, Portugal
Georgios Theodoridis
Laboratory of Analytical Chemistry, Department of Chemistry, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
Reinhard Töpfer
Julius Kühn-Institute, Institute for Grapevine Breeding Geilweilerhof, D-76833 Siebeldingen, Germany
Urska Vrhovsek
Department of Food Quality and Nutrition, Edmund Mach Foundation, Research and Innovation Centre, Via Edmund Mach 1, 38010 San Michele all’Adige, Italy
Anne-Francoise Adam-Blondon
Université Paris-Saclay, INRAE, URGI, 78026 Versailles, France
Mario Pezzotti
Department of Biotechnology, University of Verona, 37134 Verona, Italy
Fulvio Mattivi
Department of Food Quality and Nutrition, Edmund Mach Foundation, Research and Innovation Centre, Via Edmund Mach 1, 38010 San Michele all’Adige, Italy
In the era of big and omics data, good organization, management, and description of experimental data are crucial for achieving high-quality datasets. This, in turn, is essential for the export of robust results, to publish reliable papers, make data more easily available, and unlock the huge potential of data reuse. Lately, more and more journals now require authors to share data and metadata according to the FAIR (Findable, Accessible, Interoperable, Reusable) principles. This work aims to provide a step-by-step guideline for the FAIR data and metadata management specific to grapevine and wine science. In detail, the guidelines include recommendations for the organization of data and metadata regarding (i) meaningful information on experimental design and phenotyping, (ii) sample collection, (iii) sample preparation, (iv) chemotype analysis, (v) data analysis (vi) metabolite annotation, and (vii) basic ontologies. We hope that these guidelines will be helpful for the grapevine and wine metabolomics community and that it will benefit from the true potential of data usage in creating new knowledge being revealed.
