Nature Communications (Dec 2018)

Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models

  • David Heckmann,
  • Colton J. Lloyd,
  • Nathan Mih,
  • Yuanchi Ha,
  • Daniel C. Zielinski,
  • Zachary B. Haiman,
  • Abdelmoneim Amer Desouki,
  • Martin J. Lercher,
  • Bernhard O. Palsson

DOI
https://doi.org/10.1038/s41467-018-07652-6
Journal volume & issue
Vol. 9, no. 1
pp. 1 – 10

Abstract

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Experimental data on enzyme turnover numbers is sparse and noisy. Here, the authors use machine learning to successfully predict enzyme turnover numbers for E. coli, and show that using these to parameterize mechanistic genome-scale models enhances their predictive accuracy.