Nature Communications (Oct 2016)

Comparative survey of the relative impact of mRNA features on local ribosome profiling read density

  • Patrick B. F. O’Connor,
  • Dmitry E. Andreev,
  • Pavel V. Baranov

DOI
https://doi.org/10.1038/ncomms12915
Journal volume & issue
Vol. 7, no. 1
pp. 1 – 12

Abstract

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Ribosome profiling data can suffer from uneven coverage which hampers estimation of elongation rates. Connor et al.present an enhanced data smoothing method for Ribo-seq data and highlight significant variability in sequence determinants of ribosome density in publicly available data sets.