System-wide mapping of peptide-GPCR interactions in C. elegans
Isabel Beets,
Sven Zels,
Elke Vandewyer,
Jonas Demeulemeester,
Jelle Caers,
Esra Baytemur,
Amy Courtney,
Luca Golinelli,
İlayda Hasakioğulları,
William R. Schafer,
Petra E. Vértes,
Olivier Mirabeau,
Liliane Schoofs
Affiliations
Isabel Beets
Department of Biology, KU Leuven, 3000 Leuven, Belgium; Corresponding author
Sven Zels
Department of Biology, KU Leuven, 3000 Leuven, Belgium
Elke Vandewyer
Department of Biology, KU Leuven, 3000 Leuven, Belgium
Jonas Demeulemeester
The Francis Crick Institute, London NW1 1AT, UK; VIB – KU Leuven Center for Cancer Biology, 3000 Leuven, Belgium; Department of Oncology, KU Leuven, 3000 Leuven, Belgium
Jelle Caers
Department of Biology, KU Leuven, 3000 Leuven, Belgium
Esra Baytemur
Department of Biology, KU Leuven, 3000 Leuven, Belgium
Amy Courtney
Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
Luca Golinelli
Department of Biology, KU Leuven, 3000 Leuven, Belgium
İlayda Hasakioğulları
Department of Biology, KU Leuven, 3000 Leuven, Belgium
William R. Schafer
Neurobiology Division, MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK
Petra E. Vértes
Department of Psychiatry, Behavioural and Clinical Neuroscience Institute, University of Cambridge, Cambridge CB2 3EB, UK
Olivier Mirabeau
Institut Pasteur, Université Paris Cité, Bioinformatics and Biostatistics Hub, Inserm U1224, Brain-Immune Communication Lab, 75015 Paris, France
Liliane Schoofs
Department of Biology, KU Leuven, 3000 Leuven, Belgium
Summary: Neuropeptides and peptide hormones are ancient, widespread signaling molecules that underpin almost all brain functions. They constitute a broad ligand-receptor network, mainly by binding to G protein-coupled receptors (GPCRs). However, the organization of the peptidergic network and roles of many peptides remain elusive, as our insight into peptide-receptor interactions is limited and many peptide GPCRs are still orphan receptors. Here we report a genome-wide peptide-GPCR interaction map in Caenorhabditis elegans. By reverse pharmacology screening of over 55,384 possible interactions, we identify 461 cognate peptide-GPCR couples that uncover a broad signaling network with specific and complex combinatorial interactions encoded across and within single peptidergic genes. These interactions provide insights into peptide functions and evolution. Combining our dataset with phylogenetic analysis supports peptide-receptor co-evolution and conservation of at least 14 bilaterian peptidergic systems in C. elegans. This resource lays a foundation for system-wide analysis of the peptidergic network.