Clinical and Translational Medicine (Apr 2022)
Clinical and transcriptomic features of persistent exacerbation‐prone severe asthma in U‐BIOPRED cohort
- Uruj Hoda,
- Stelios Pavlidis,
- Aruna T. Bansal,
- Kentaro Takahashi,
- Sile Hu,
- Francois Ng Kee Kwong,
- Christos Rossios,
- Kai Sun,
- Pankaj Bhavsar,
- Matthew Loza,
- Frederic Baribaud,
- Pascal Chanez,
- Stephen J. Fowler,
- Ildiko Horvath,
- Paolo Montuschi,
- Florian Singer,
- Jacek Musial,
- Barbro Dahlen,
- Norbert Krug,
- Thomas Sandstrom,
- Dominic E. Shaw,
- Rene Lutter,
- Louise J. Fleming,
- Peter H. Howarth,
- Massimo Caruso,
- Ana R. Sousa,
- Julie Corfield,
- Charles Auffray,
- Bertrand De Meulder,
- Diane Lefaudeux,
- Sven‐Erik Dahlen,
- Ratko Djukanovic,
- Peter J. Sterk,
- Yike Guo,
- Ian M. Adcock,
- Kian Fan Chung,
- the U‐BIOPRED study group
Affiliations
- Uruj Hoda
- National Heart and Lung Institute Imperial College London, and Biomedical Research Unit Royal Brompton and Harefield NHS Trust London UK
- Stelios Pavlidis
- Department of Computing & Data Science Institute Imperial College London
- Aruna T. Bansal
- Acclarogen Cambridge UK
- Kentaro Takahashi
- National Heart and Lung Institute Imperial College London, and Biomedical Research Unit Royal Brompton and Harefield NHS Trust London UK
- Sile Hu
- Acclarogen Cambridge UK
- Francois Ng Kee Kwong
- National Heart and Lung Institute Imperial College London, and Biomedical Research Unit Royal Brompton and Harefield NHS Trust London UK
- Christos Rossios
- National Heart and Lung Institute Imperial College London, and Biomedical Research Unit Royal Brompton and Harefield NHS Trust London UK
- Kai Sun
- Acclarogen Cambridge UK
- Pankaj Bhavsar
- National Heart and Lung Institute Imperial College London, and Biomedical Research Unit Royal Brompton and Harefield NHS Trust London UK
- Matthew Loza
- Janssen Research and Development High Wycombe Buckinghamshire UK
- Frederic Baribaud
- Janssen Research and Development High Wycombe Buckinghamshire UK
- Pascal Chanez
- Assistance Publique des Hôpitaux de Marseille, Clinique des Bronches Allergies et Sommeil Aix Marseille Université Marseille France
- Stephen J. Fowler
- Division of Infection Immunity and Respiratory Medicine Faculty of Biology School of Biological Sciences Medicine and Health University of Manchester, Manchester Academic Health Science Centre, and NIHR Biomedical Research Centre Manchester University Hospitals NHS Foundation Trust Manchester UK
- Ildiko Horvath
- Department of Pulmonology Semmelweis University Budapest Hungary
- Paolo Montuschi
- Catholic University of Sacred Heart Rome Italy
- Florian Singer
- Department of Respiratory Medicine University Children's Hospital Zurich and Childhood Research Center Zurich, and Department of Paediatrics Inselspital University of Bern Switzerland
- Jacek Musial
- Department of Medicine Jagiellonian University Medical College Krakow Poland
- Barbro Dahlen
- Centre for Allergy Research Karolinska Institutet Stockholm Sweden
- Norbert Krug
- Fraunhofer Institute for Toxicology and Experimental Medicine Hannover Germany
- Thomas Sandstrom
- Department of Public Health and Clinical Medicine Umeå University Umeå Sweden
- Dominic E. Shaw
- Respiratory Research Unit University of Nottingham UK
- Rene Lutter
- Academic Medical Centre University of Amsterdam Amsterdam The Netherlands
- Louise J. Fleming
- National Heart and Lung Institute Imperial College London, and Biomedical Research Unit Royal Brompton and Harefield NHS Trust London UK
- Peter H. Howarth
- NIHR Southampton Biomedical Research Centre Clinical and Experimental Sciences Faculty of Medicine University of Southampton UK
- Massimo Caruso
- Department of Biochemical and Biotechnological Medicine University of Catania Catania Italy
- Ana R. Sousa
- Respiratory Therapeutic Unit GSK Stockley Park UK
- Julie Corfield
- AstraZeneca R&D, Molndal Sweden, and Areteva R&D Nottingham UK
- Charles Auffray
- European Institute for Systems Biology and Medicine CNRS‐ENS‐UCBL‐INSERM Lyon France
- Bertrand De Meulder
- European Institute for Systems Biology and Medicine CNRS‐ENS‐UCBL‐INSERM Lyon France
- Diane Lefaudeux
- European Institute for Systems Biology and Medicine CNRS‐ENS‐UCBL‐INSERM Lyon France
- Sven‐Erik Dahlen
- Centre for Allergy Research Karolinska Institutet Stockholm Sweden
- Ratko Djukanovic
- NIHR Southampton Biomedical Research Centre Clinical and Experimental Sciences Faculty of Medicine University of Southampton UK
- Peter J. Sterk
- Academic Medical Centre University of Amsterdam Amsterdam The Netherlands
- Yike Guo
- Acclarogen Cambridge UK
- Ian M. Adcock
- National Heart and Lung Institute Imperial College London, and Biomedical Research Unit Royal Brompton and Harefield NHS Trust London UK
- Kian Fan Chung
- National Heart and Lung Institute Imperial College London, and Biomedical Research Unit Royal Brompton and Harefield NHS Trust London UK
- the U‐BIOPRED study group
- DOI
- https://doi.org/10.1002/ctm2.816
- Journal volume & issue
-
Vol. 12,
no. 4
pp. n/a – n/a
Abstract
Abstract Background Exacerbation‐prone asthma is a feature of severe disease. However, the basis for its persistency remains unclear. Objectives To determine the clinical and transcriptomic features of frequent exacerbators (FEs) and persistent FEs (PFEs) in the U‐BIOPRED cohort. Methods We compared features of FE (≥2 exacerbations in past year) to infrequent exacerbators (IE, <2 exacerbations) and of PFE with repeat ≥2 exacerbations during the following year to persistent IE (PIE). Transcriptomic data in blood, bronchial and nasal epithelial brushings, bronchial biopsies and sputum cells were analysed by gene set variation analysis for 103 gene signatures. Results Of 317 patients, 62.4% had FE, of whom 63.6% had PFE, while 37.6% had IE, of whom 61.3% had PIE. Using multivariate analysis, FE was associated with short‐acting beta‐agonist use, sinusitis and daily oral corticosteroid use, while PFE was associated with eczema, short‐acting beta‐agonist use and asthma control index. CEA cell adhesion molecule 5 (CEACAM5) was the only differentially expressed transcript in bronchial biopsies between PE and IE. There were no differentially expressed genes in the other four compartments. There were higher expression scores for type 2, T‐helper type‐17 and type 1 pathway signatures together with those associated with viral infections in bronchial biopsies from FE compared to IE, while there were higher expression scores of type 2, type 1 and steroid insensitivity pathway signatures in bronchial biopsies of PFE compared to PIE. Conclusion The FE group and its PFE subgroup are associated with poor asthma control while expressing higher type 1 and type 2 activation pathways compared to IE and PIE, respectively.
Keywords