Ominoxanthone—The First Xanthone Linearly Fused to a γ-Lactone from <i>Cortinarius ominosus</i> Bidaud Basidiomata. CASE- and DFT-Based Structure Elucidation
Alice Trac,
Célia Issaad,
Mehdi A. Beniddir,
Jean-Michel Bellanger,
Jean-François Gallard,
Alexei V. Buevich,
Mikhail E. Elyashberg,
Pierre Le Pogam
Affiliations
Alice Trac
Équipe “Chimie des Substances Naturelles” BioCIS, CNRS, Université Paris-Saclay, 17 Avenue des Sciences, 91400 Orsay, France
Célia Issaad
Équipe “Chimie des Substances Naturelles” BioCIS, CNRS, Université Paris-Saclay, 17 Avenue des Sciences, 91400 Orsay, France
Mehdi A. Beniddir
Équipe “Chimie des Substances Naturelles” BioCIS, CNRS, Université Paris-Saclay, 17 Avenue des Sciences, 91400 Orsay, France
Jean-Michel Bellanger
CEFE, CNRS, Université Montpellier, EPHE, IRD, INSERM, 1919 Route de Mende, CEDEX 5, 34293 Montpellier, France
Jean-François Gallard
Institut de Chimie des Substances Naturelles, CNRS, ICSN UPR 2301, Université Paris-Saclay, 91198 Gif-sur-Yvette, France
Alexei V. Buevich
Process and Analytical Chemistry, Merck & Co., Inc., 2015 Galloping Hill Road, Kenilworth, New Jersey, NJ 07033, USA
Mikhail E. Elyashberg
Advanced Chemistry Development Inc. (ACD/Labs), 8 King Street, Toronto, ON M5C 1B5, Canada
Pierre Le Pogam
Équipe “Chimie des Substances Naturelles” BioCIS, CNRS, Université Paris-Saclay, 17 Avenue des Sciences, 91400 Orsay, France
The UHPLC–HRMS analysis of Cortinarius ominosus basidiomata extract revealed that this mushroom accumulated elevated yields of an unreported specialized metabolite. The molecular formula of this unknown compound, C17H10O8, indicated that a challenging structure elucidation lay ahead, owing to its critically low H/C atom ratio. The structure of this new isolate, namely ominoxanthone (1), could not be solved from the interpretation of the usual set of 1D/2D NMR data that conveyed too limited information to afford a single, unambiguous structure. To remedy this, a Computer-Assisted Structure Elucidation (CASE) workflow was used to rank the different possible structure candidates consistent with our scarce spectroscopic data. DFT-based chemical shift calculations on a limited set of top-ranked structures further ascertained the determined structure for ominoxanthone. Although the determined scaffold of ominoxanthone is unprecedented as a natural product, a plausible biosynthetic scenario involving a precursor known from cortinariaceous sources and classical biogenetic reactions could be proposed.