Data on genome resequencing of pigmented and non-pigmented Malaysian rice varieties
Rabiatul-Adawiah Zainal-Abidin,
Zamri Zainal,
Zeti-Azura Mohamed-Hussein,
Yun Shin Sew,
Sanimah Simoh,
Shahril Ab Razak,
Norliza Abu-Bakar
Affiliations
Rabiatul-Adawiah Zainal-Abidin
Biotechnology and Nanotechnology Research Centre, Malaysian Agricultural Research & Development Institute (MARDI), 43400 Serdang, Selangor, Malaysia; Institute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia; Corresponding author.
Zamri Zainal
Institute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia; Centre for Frontier Sciences, Faculty of Science & Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia
Zeti-Azura Mohamed-Hussein
Institute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia; Centre for Frontier Sciences, Faculty of Science & Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia
Yun Shin Sew
Biotechnology and Nanotechnology Research Centre, Malaysian Agricultural Research & Development Institute (MARDI), 43400 Serdang, Selangor, Malaysia
Sanimah Simoh
Biotechnology and Nanotechnology Research Centre, Malaysian Agricultural Research & Development Institute (MARDI), 43400 Serdang, Selangor, Malaysia
Shahril Ab Razak
Biotechnology and Nanotechnology Research Centre, Malaysian Agricultural Research & Development Institute (MARDI), 43400 Serdang, Selangor, Malaysia
Norliza Abu-Bakar
Biotechnology and Nanotechnology Research Centre, Malaysian Agricultural Research & Development Institute (MARDI), 43400 Serdang, Selangor, Malaysia
The genomics and genetic data of pigmented and non-pigmented Malaysian rice varieties are still limited. Hence, we performed the genome resequencing of two black rice varieties (Bali, Pulut Hitam 9), two red rice varieties (MRM16, MRQ100) and two white rice varieties (MR297 and MRQ76) using Illumina HiSeq 4000 platform with 30x sequencing coverage. We aimed to identify and annotate single nucleotide polymorphisms (SNPs) from the genome of these four pigmented and two non-pigmented rice varieties. The potential SNPs will be used in developing the functional SNP markers related to nutritional (i.e. antioxidant, folate, amylose) and quality (i.e. aromatic) traits. Raw data of the pigmented and non-pigmented rice varieties have been deposited into the European Nucleotide Archive (ENA) database with accession number PRJEB29070 and PRJEB32344, respectively.
