The microbiota and the host organism switch between cooperation and competition based on dietary iron levels
Marie-Louise Noordine,
Yohannes Seyoum,
Aurélia Bruneau,
Kaleab Baye,
Thibaud Lefebvre,
Claire Cherbuy,
François Canonne-Hergaux,
Gaël Nicolas,
Christèle Humblot,
Muriel Thomas
Affiliations
Marie-Louise Noordine
Micalis Institute, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), AgroParisTech, Université Paris-Saclay, UMR1319, Jouy-en-Josas, France
Yohannes Seyoum
Micalis Institute, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), AgroParisTech, Université Paris-Saclay, UMR1319, Jouy-en-Josas, France
Aurélia Bruneau
Micalis Institute, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), AgroParisTech, Université Paris-Saclay, UMR1319, Jouy-en-Josas, France
Kaleab Baye
Center for Food Science and Nutrition, College of Natural and Computational Sciences, Addis Ababa University, Addis Ababa, Ethiopia
Thibaud Lefebvre
Assistance Publique-Hôpitaux de Paris, Centre Français des Porphyries, Hôpital Louis Mourier, Colombes, France
Claire Cherbuy
Micalis Institute, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), AgroParisTech, Université Paris-Saclay, UMR1319, Jouy-en-Josas, France
François Canonne-Hergaux
IRSD, Université de Toulouse, INSERM, INRAE, ENVT, Univ Toulouse III - Paul Sabatier (UPS), Toulouse, France
Gaël Nicolas
Institut National de la Santé et de la Recherche Médicale, U1149, Centre de Recherches sur l’Inflammation, Paris, France
Christèle Humblot
QualiSud, Université de Montpellier, Avignon Université, CIRAD, Institut Agro, IRD, Université de la Réunion, Montpellier Cedex, France
Muriel Thomas
Micalis Institute, Institut national de recherche pour l’agriculture, l’alimentation et l’environnement (INRAE), AgroParisTech, Université Paris-Saclay, UMR1319, Jouy-en-Josas, France
The microbiota significantly impacts digestive epithelium functionality, especially in nutrient processing. Given the importance of iron for both the host and the microbiota, we hypothesized that host-microbiota interactions fluctuate with dietary iron levels. We compared germ-free (GF) and conventional mice (SPF) fed iron-containing (65 mg/Kg) or iron-depleted (<6 mg/Kg) diets. The efficacy of iron privation was validated by iron blood parameters. Ferritin and Dmt1, which represent cellular iron storage and transport respectively, were studied in tissues where they are abundant: the duodenum, liver and lung. When the mice were fed an iron-rich diet, the microbiota increased blood hemoglobin and hepcidin and the intestinal ferritin levels, suggesting that the microbiota helps iron storage. When iron was limiting, the microbiota inhibited the expression of the intestinal Dmt1 transporter, likely via the pathway triggered by Hif-2α. The microbiota assists the host in storing intestinal iron when it is abundant and competes with the host by inhibiting Dmt1 in conditions of iron scarcity. Comparison between duodenum, liver and lung indicates organ-specific responses to microbiota and iron availability. Iron depletion induced temporal changes in microbiota composition and activity, reduced α-diversity of microbiota, and led to Lactobacillaceae becoming particularly more abundant after 60 days of privation. By inoculating GF mice with a simplified bacterial mixture, we show that the iron-depleted host favors the gut fitness of Bifidobacterium longum.