Micro-Raman Characterization of Structural Features of High-k Stack Layer of SOI Nanowire Chip, Designed to Detect Circular RNA Associated with the Development of Glioma
Yuri D. Ivanov,
Kristina A. Malsagova,
Vladimir P. Popov,
Igor N. Kupriyanov,
Tatyana O. Pleshakova,
Rafael A. Galiullin,
Vadim S. Ziborov,
Alexander Yu. Dolgoborodov,
Oleg F. Petrov,
Andrey V. Miakonkikh,
Konstantin V. Rudenko,
Alexander V. Glukhov,
Alexander Yu. Smirnov,
Dmitry Yu. Usachev,
Olga A. Gadzhieva,
Boris A. Bashiryan,
Vadim N. Shimansky,
Dmitry V. Enikeev,
Natalia V. Potoldykova,
Alexander I. Archakov
Affiliations
Yuri D. Ivanov
Laboratory of Nanobiotechnology, Institute of Biomedical Chemistry, 119121 Moscow, Russia
Kristina A. Malsagova
Laboratory of Nanobiotechnology, Institute of Biomedical Chemistry, 119121 Moscow, Russia
Vladimir P. Popov
Rzhanov Institute of Semiconductor Physics, Siberian Branch of Russian Academy of Sciences, 630090 Novosibirsk, Russia
Igor N. Kupriyanov
Laboratory of Experimental Mineralogy and Crystallogenesis, Sobolev Institute of Geology and Mineralogy, Siberian Branch of Russian Academy of Sciences, 630090 Novosibirsk, Russia
Tatyana O. Pleshakova
Laboratory of Nanobiotechnology, Institute of Biomedical Chemistry, 119121 Moscow, Russia
Rafael A. Galiullin
Laboratory of Nanobiotechnology, Institute of Biomedical Chemistry, 119121 Moscow, Russia
Vadim S. Ziborov
Laboratory of Nanobiotechnology, Institute of Biomedical Chemistry, 119121 Moscow, Russia
Alexander Yu. Dolgoborodov
Joint Institute for High Temperatures of Russian Academy of Sciences, 125412 Moscow, Russia
Oleg F. Petrov
Joint Institute for High Temperatures of Russian Academy of Sciences, 125412 Moscow, Russia
Andrey V. Miakonkikh
K. A. Valiev Institute of Physics and Technology of the Russian Academy of Sciences, 117218 Moscow, Russia
Konstantin V. Rudenko
K. A. Valiev Institute of Physics and Technology of the Russian Academy of Sciences, 117218 Moscow, Russia
Alexander V. Glukhov
JSC Novosibirsk Plant of Semiconductor Devices with OKB, 630082 Novosibirsk, Russia
Alexander Yu. Smirnov
Russian Union of Industrialists and Entrepreneurs, 109240 Moscow, Russia
Dmitry Yu. Usachev
Federal State Autonomous Institution “N. N. Burdenko National Medical Research Center of Neurosurgery” of the Ministry of Health of the Russian Federation, 125047 Moscow, Russia
Olga A. Gadzhieva
Federal State Autonomous Institution “N. N. Burdenko National Medical Research Center of Neurosurgery” of the Ministry of Health of the Russian Federation, 125047 Moscow, Russia
Boris A. Bashiryan
Federal State Autonomous Institution “N. N. Burdenko National Medical Research Center of Neurosurgery” of the Ministry of Health of the Russian Federation, 125047 Moscow, Russia
Vadim N. Shimansky
Federal State Autonomous Institution “N. N. Burdenko National Medical Research Center of Neurosurgery” of the Ministry of Health of the Russian Federation, 125047 Moscow, Russia
Dmitry V. Enikeev
Institute for Urology and Reproductive Health, Sechenov University, 119992 Moscow, Russia
Natalia V. Potoldykova
Institute for Urology and Reproductive Health, Sechenov University, 119992 Moscow, Russia
Alexander I. Archakov
Laboratory of Nanobiotechnology, Institute of Biomedical Chemistry, 119121 Moscow, Russia
The application of micro-Raman spectroscopy was used for characterization of structural features of the high-k stack (h-k) layer of “silicon-on-insulator” (SOI) nanowire (NW) chip (h-k-SOI-NW chip), including Al2O3 and HfO2 in various combinations after heat treatment from 425 to 1000 °C. After that, the NW structures h-k-SOI-NW chip was created using gas plasma etching optical lithography. The stability of the signals from the monocrine phase of HfO2 was shown. Significant differences were found in the elastic stresses of the silicon layers for very thick (>200 nm) Al2O3 layers. In the UV spectra of SOI layers of a silicon substrate with HfO2, shoulders in the Raman spectrum were observed at 480–490 cm−1 of single-phonon scattering. The h-k-SOI-NW chip created in this way has been used for the detection of DNA-oligonucleotide sequences (oDNA), that became a synthetic analog of circular RNA–circ-SHKBP1 associated with the development of glioma at a concentration of 1.1 × 10−16 M. The possibility of using such h-k-SOI NW chips for the detection of circ-SHKBP1 in blood plasma of patients diagnosed with neoplasm of uncertain nature of the brain and central nervous system was shown.