Communications Medicine (Aug 2022)
A user-friendly tool for cloud-based whole slide image segmentation with examples from renal histopathology
- Brendon Lutnick,
- David Manthey,
- Jan U. Becker,
- Brandon Ginley,
- Katharina Moos,
- Jonathan E. Zuckerman,
- Luis Rodrigues,
- Alexander J. Gallan,
- Laura Barisoni,
- Charles E. Alpers,
- Xiaoxin X. Wang,
- Komuraiah Myakala,
- Bryce A. Jones,
- Moshe Levi,
- Jeffrey B. Kopp,
- Teruhiko Yoshida,
- Jarcy Zee,
- Seung Seok Han,
- Sanjay Jain,
- Avi Z. Rosenberg,
- Kuang Yu. Jen,
- Pinaki Sarder,
- the Kidney Precision Medicine Project
Affiliations
- Brendon Lutnick
- Department of Pathology and Anatomical Sciences, SUNY Buffalo
- David Manthey
- Kitware Incorporated
- Jan U. Becker
- Institute of Pathology, University Hospital Cologne
- Brandon Ginley
- Department of Pathology and Anatomical Sciences, SUNY Buffalo
- Katharina Moos
- Institute of Pathology, University Hospital Cologne
- Jonathan E. Zuckerman
- Department of Pathology and Laboratory Medicine, University of California at Los Angeles
- Luis Rodrigues
- University Clinic of Nephrology, Faculty of Medicine, University of Coimbra
- Alexander J. Gallan
- Department of Pathology, Medical College of Wisconsin
- Laura Barisoni
- Departments of Pathology and Medicine, Duke University
- Charles E. Alpers
- Department of Laboratory Medicine and Pathology, University of Washington
- Xiaoxin X. Wang
- Departments of Biochemistry and Molecular & Cellular Biology, Georgetown University
- Komuraiah Myakala
- Departments of Biochemistry and Molecular & Cellular Biology, Georgetown University
- Bryce A. Jones
- Department of Pharmacology and Physiology, Georgetown University
- Moshe Levi
- Departments of Biochemistry and Molecular & Cellular Biology, Georgetown University
- Jeffrey B. Kopp
- Kidney Disease Section, NIDDK, NIH
- Teruhiko Yoshida
- Kidney Disease Section, NIDDK, NIH
- Jarcy Zee
- Department of Biostatistics, Epidemiology, & Informatics, University of Pennsylvania
- Seung Seok Han
- Department of Internal Medicine, Seoul National University College of Medicine
- Sanjay Jain
- Department of Medicine, Nephrology, Washington University School of Medicine
- Avi Z. Rosenberg
- Department of Pathology, Johns Hopkins University
- Kuang Yu. Jen
- Department of Pathology and Laboratory Medicine, University of California at Davis
- Pinaki Sarder
- Department of Pathology and Anatomical Sciences, SUNY Buffalo
- the Kidney Precision Medicine Project
- DOI
- https://doi.org/10.1038/s43856-022-00138-z
- Journal volume & issue
-
Vol. 2,
no. 1
pp. 1 – 15
Abstract
Lutnick et al. develop a cloud-based deep learning tool for whole slide image segmentation. The authors provide several examples of its application in renal pathology, for segmenting glomeruli, interstitial fibrosis and other features of interest.
