Cell Death and Disease (Jun 2022)

Identification of an Epi-metabolic dependency on EHMT2/G9a in T-cell acute lymphoblastic leukemia

  • Anna Montanaro,
  • Samuel Kitara,
  • Elisa Cerretani,
  • Matteo Marchesini,
  • Chiara Rompietti,
  • Luca Pagliaro,
  • Andrea Gherli,
  • Angela Su,
  • Maria Laura Minchillo,
  • Mariafrancesca Caputi,
  • Rodanthi Fioretzaki,
  • Bruno Lorusso,
  • Linda Ross,
  • Gabriela Alexe,
  • Elena Masselli,
  • Marina Marozzi,
  • Federica Maria Angela Rizzi,
  • Roberta La Starza,
  • Cristina Mecucci,
  • Yan Xiong,
  • Jian Jin,
  • Angela Falco,
  • Birgit Knoechel,
  • Franco Aversa,
  • Olivia Candini,
  • Federico Quaini,
  • Paolo Sportoletti,
  • Kimberly Stegmaier,
  • Giovanni Roti

DOI
https://doi.org/10.1038/s41419-022-05002-5
Journal volume & issue
Vol. 13, no. 6
pp. 1 – 14

Abstract

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Abstract Genomic studies have identified recurrent somatic alterations in genes involved in DNA methylation and post-translational histone modifications in acute lymphoblastic leukemia (ALL), suggesting new opportunities for therapeutic interventions. In this study, we identified G9a/EHMT2 as a potential target in T-ALL through the intersection of epigenome-centered shRNA and chemical screens. We subsequently validated G9a with low-throughput CRISPR-Cas9-based studies targeting the catalytic G9a SET-domain and the testing of G9a chemical inhibitors in vitro, 3D, and in vivo T-ALL models. Mechanistically we determined that G9a repression promotes lysosomal biogenesis and autophagic degradation associated with the suppression of sestrin2 (SESN2) and inhibition of glycogen synthase kinase-3 (GSK-3), suggesting that in T-ALL glycolytic dependent pathways are at least in part under epigenetic control. Thus, targeting G9a represents a strategy to exhaust the metabolic requirement of T-ALL cells.