Communications Biology (Dec 2022)
A molecular barcode and web-based data analysis tool to identify imported Plasmodium vivax malaria
- Hidayat Trimarsanto,
- Roberto Amato,
- Richard D. Pearson,
- Edwin Sutanto,
- Rintis Noviyanti,
- Leily Trianty,
- Jutta Marfurt,
- Zuleima Pava,
- Diego F. Echeverry,
- Tatiana M. Lopera-Mesa,
- Lidia M. Montenegro,
- Alberto Tobón-Castaño,
- Matthew J. Grigg,
- Bridget Barber,
- Timothy William,
- Nicholas M. Anstey,
- Sisay Getachew,
- Beyene Petros,
- Abraham Aseffa,
- Ashenafi Assefa,
- Awab G. Rahim,
- Nguyen H. Chau,
- Tran T. Hien,
- Mohammad S. Alam,
- Wasif A. Khan,
- Benedikt Ley,
- Kamala Thriemer,
- Sonam Wangchuck,
- Yaghoob Hamedi,
- Ishag Adam,
- Yaobao Liu,
- Qi Gao,
- Kanlaya Sriprawat,
- Marcelo U. Ferreira,
- Moses Laman,
- Alyssa Barry,
- Ivo Mueller,
- Marcus V. G. Lacerda,
- Alejandro Llanos-Cuentas,
- Srivicha Krudsood,
- Chanthap Lon,
- Rezika Mohammed,
- Daniel Yilma,
- Dhelio B. Pereira,
- Fe E. J. Espino,
- Cindy S. Chu,
- Iván D. Vélez,
- Chayadol Namaik-larp,
- Maria F. Villegas,
- Justin A. Green,
- Gavin Koh,
- Julian C. Rayner,
- Eleanor Drury,
- Sónia Gonçalves,
- Victoria Simpson,
- Olivo Miotto,
- Alistair Miles,
- Nicholas J. White,
- Francois Nosten,
- Dominic P. Kwiatkowski,
- Ric N. Price,
- Sarah Auburn
Affiliations
- Hidayat Trimarsanto
- Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University
- Roberto Amato
- Wellcome Sanger Institute, Wellcome Genome Campus
- Richard D. Pearson
- Wellcome Sanger Institute, Wellcome Genome Campus
- Edwin Sutanto
- Eijkman Institute for Molecular Biology
- Rintis Noviyanti
- Eijkman Institute for Molecular Biology
- Leily Trianty
- Eijkman Institute for Molecular Biology
- Jutta Marfurt
- Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University
- Zuleima Pava
- Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University
- Diego F. Echeverry
- International Training and Medical Research Center (CIDEIM)
- Tatiana M. Lopera-Mesa
- Malaria Group, Universidad de Antioquia
- Lidia M. Montenegro
- Malaria Group, Universidad de Antioquia
- Alberto Tobón-Castaño
- Malaria Group, Universidad de Antioquia
- Matthew J. Grigg
- Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University
- Bridget Barber
- Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University
- Timothy William
- Infectious Diseases Society Sabah-Menzies School of Health Research Clinical Research Unit
- Nicholas M. Anstey
- Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University
- Sisay Getachew
- College of Natural Sciences, Addis Ababa University
- Beyene Petros
- College of Natural Sciences, Addis Ababa University
- Abraham Aseffa
- Armauer Hansen Research Institute
- Ashenafi Assefa
- Ethiopian Public Health Institute
- Awab G. Rahim
- Mahidol‐Oxford Tropical Medicine Research Unit, Mahidol University
- Nguyen H. Chau
- Oxford University Clinical Research Unit, Hospital for Tropical Diseases
- Tran T. Hien
- Oxford University Clinical Research Unit, Hospital for Tropical Diseases
- Mohammad S. Alam
- Infectious Diseases Division, International Centre for Diarrheal Diseases Research
- Wasif A. Khan
- Infectious Diseases Division, International Centre for Diarrheal Diseases Research
- Benedikt Ley
- Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University
- Kamala Thriemer
- Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University
- Sonam Wangchuck
- Royal Center for Disease Control, Department of Public Health, Ministry of Health
- Yaghoob Hamedi
- Infectious and Tropical Diseases Research Center, Hormozgan University of Medical Sciences
- Ishag Adam
- Faculty of Medicine, University of Khartoum
- Yaobao Liu
- National Health Commission Key Laboratory of Parasitic Disease Control and Prevention, Jiangsu Provincial Key Laboratory on Parasite and Vector Control Technology, Jiangsu Institute of Parasitic Diseases
- Qi Gao
- National Health Commission Key Laboratory of Parasitic Disease Control and Prevention, Jiangsu Provincial Key Laboratory on Parasite and Vector Control Technology, Jiangsu Institute of Parasitic Diseases
- Kanlaya Sriprawat
- Shoklo Malaria Research Unit, Faculty of Tropical Medicine, Mahidol University
- Marcelo U. Ferreira
- Department of Parasitology, Institute of Biomedical Sciences, University of São Paulo
- Moses Laman
- Papua New Guinea Institute of Medical Research
- Alyssa Barry
- Deakin University
- Ivo Mueller
- Population Health and Immunity Division, The Walter and Eliza Hall Institute of Medical Research
- Marcus V. G. Lacerda
- Fundação de Medicina Tropical
- Alejandro Llanos-Cuentas
- Universidad Peruana Cayetano Heredia
- Srivicha Krudsood
- Mahidol University
- Chanthap Lon
- Armed Forces Research Institute of Medical Sciences
- Rezika Mohammed
- University of Gondar
- Daniel Yilma
- Jimma University
- Dhelio B. Pereira
- Centro de Pesquisa em Medicina Tropical
- Fe E. J. Espino
- Research Institute for Tropical Medicine
- Cindy S. Chu
- Mahidol‐Oxford Tropical Medicine Research Unit, Mahidol University
- Iván D. Vélez
- Malaria Group, Universidad de Antioquia
- Chayadol Namaik-larp
- Umphang Hospital
- Maria F. Villegas
- Centro de Investigaciones Clinicas
- Justin A. Green
- GlaxoSmithKline
- Gavin Koh
- GlaxoSmithKline
- Julian C. Rayner
- Wellcome Sanger Institute, Wellcome Genome Campus
- Eleanor Drury
- Wellcome Sanger Institute, Wellcome Genome Campus
- Sónia Gonçalves
- Wellcome Sanger Institute, Wellcome Genome Campus
- Victoria Simpson
- Wellcome Sanger Institute, Wellcome Genome Campus
- Olivo Miotto
- Wellcome Sanger Institute, Wellcome Genome Campus
- Alistair Miles
- Wellcome Sanger Institute, Wellcome Genome Campus
- Nicholas J. White
- Mahidol‐Oxford Tropical Medicine Research Unit, Mahidol University
- Francois Nosten
- Shoklo Malaria Research Unit, Faculty of Tropical Medicine, Mahidol University
- Dominic P. Kwiatkowski
- Wellcome Sanger Institute, Wellcome Genome Campus
- Ric N. Price
- Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University
- Sarah Auburn
- Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University
- DOI
- https://doi.org/10.1038/s42003-022-04352-2
- Journal volume & issue
-
Vol. 5,
no. 1
pp. 1 – 10
Abstract
An online, amendable classifier for detecting malaria parasite country of origin from genomic data is developed using a machine learning approach.
