Evolutionary Applications (Jan 2023)
Towards evolutionary predictions: Current promises and challenges
- Meike T. Wortel,
- Deepa Agashe,
- Susan F. Bailey,
- Claudia Bank,
- Karen Bisschop,
- Thomas Blankers,
- Johannes Cairns,
- Enrico Sandro Colizzi,
- Davide Cusseddu,
- Michael M. Desai,
- Bram vanDijk,
- Martijn Egas,
- Jacintha Ellers,
- Astrid T. Groot,
- David G. Heckel,
- Marcelle L. Johnson,
- Ken Kraaijeveld,
- Joachim Krug,
- Liedewij Laan,
- Michael Lässig,
- Peter A. Lind,
- Jeroen Meijer,
- Luke M. Noble,
- Samir Okasha,
- Paul B. Rainey,
- Daniel E. Rozen,
- Shraddha Shitut,
- Sander J. Tans,
- Olivier Tenaillon,
- Henrique Teotónio,
- J. Arjan G. M. deVisser,
- Marcel E. Visser,
- Renske M. A. Vroomans,
- Gijsbert D. A. Werner,
- Bregje Wertheim,
- Pleuni S. Pennings
Affiliations
- Meike T. Wortel
- Swammerdam Institute for Life Sciences University of Amsterdam Amsterdam The Netherlands
- Deepa Agashe
- National Centre for Biological Sciences Bangalore India
- Susan F. Bailey
- Clarkson University Potsdam New York USA
- Claudia Bank
- Institute of Ecology and Evolution University of Bern Bern Switzerland
- Karen Bisschop
- Institute for Biodiversity and Ecosystem Dynamics University of Amsterdam Amsterdam The Netherlands
- Thomas Blankers
- Institute for Biodiversity and Ecosystem Dynamics University of Amsterdam Amsterdam The Netherlands
- Johannes Cairns
- University of Helsinki Helsinki Finland
- Enrico Sandro Colizzi
- Origins Center Groningen The Netherlands
- Davide Cusseddu
- Instituto Gulbenkian de Ciência Oeiras Portugal
- Michael M. Desai
- Harvard University Cambridge Massachusetts USA
- Bram vanDijk
- Max Planck Institute for Evolutionary Biology Plön Germany
- Martijn Egas
- Institute for Biodiversity and Ecosystem Dynamics University of Amsterdam Amsterdam The Netherlands
- Jacintha Ellers
- Department of Ecological Science Vrije Universiteit Amsterdam Amsterdam The Netherlands
- Astrid T. Groot
- Institute for Biodiversity and Ecosystem Dynamics University of Amsterdam Amsterdam The Netherlands
- David G. Heckel
- Max Planck Institute for Chemical Ecology Jena Germany
- Marcelle L. Johnson
- Netherlands Institute of Ecology (NIOO‐KNAW) Wageningen The Netherlands
- Ken Kraaijeveld
- Leiden Centre for Applied Bioscience University of Applied Sciences Leiden Leiden The Netherlands
- Joachim Krug
- Institute for Biological Physics University of Cologne Cologne Germany
- Liedewij Laan
- Department of Bionanoscience, Kavli Institute of Nanoscience TU Delft Delft The Netherlands
- Michael Lässig
- Institute for Biological Physics University of Cologne Cologne Germany
- Peter A. Lind
- Department Molecular Biology Umeå University Umeå Sweden
- Jeroen Meijer
- Theoretical Biology and Bioinformatics, Department of Biology Utrecht University Utrecht The Netherlands
- Luke M. Noble
- Institute de Biologie, École Normale Supérieure, CNRS, Inserm Paris France
- Samir Okasha
- University of Bristol Bristol UK
- Paul B. Rainey
- Department of Microbial Population Biology Max Planck Institute for Evolutionary Biology Plön Germany
- Daniel E. Rozen
- Institute of Biology, Leiden University Leiden The Netherlands
- Shraddha Shitut
- Origins Center Groningen The Netherlands
- Sander J. Tans
- AMOLF Amsterdam The Netherlands
- Olivier Tenaillon
- Université Paris Cité, IAME, UMR 1137, INSERM Paris France
- Henrique Teotónio
- Institut de Biologie de l'Ecole Normale Supérieure Paris France
- J. Arjan G. M. deVisser
- Laboratory of Genetics Wageningen University & Research Wageningen The Netherlands
- Marcel E. Visser
- Department of Animal Ecology Netherlands Institute of Ecology (NIOO‐KNAW) Wageningen The Netherlands
- Renske M. A. Vroomans
- Origins Center Groningen The Netherlands
- Gijsbert D. A. Werner
- Department of Zoology University of Oxford Oxford UK
- Bregje Wertheim
- Groningen Institute for Evolutionary Life Sciences University of Groningen Groningen The Netherlands
- Pleuni S. Pennings
- San Francisco State University San Francisco California USA
- DOI
- https://doi.org/10.1111/eva.13513
- Journal volume & issue
-
Vol. 16,
no. 1
pp. 3 – 21
Abstract
Abstract Evolution has traditionally been a historical and descriptive science, and predicting future evolutionary processes has long been considered impossible. However, evolutionary predictions are increasingly being developed and used in medicine, agriculture, biotechnology and conservation biology. Evolutionary predictions may be used for different purposes, such as to prepare for the future, to try and change the course of evolution or to determine how well we understand evolutionary processes. Similarly, the exact aspect of the evolved population that we want to predict may also differ. For example, we could try to predict which genotype will dominate, the fitness of the population or the extinction probability of a population. In addition, there are many uses of evolutionary predictions that may not always be recognized as such. The main goal of this review is to increase awareness of methods and data in different research fields by showing the breadth of situations in which evolutionary predictions are made. We describe how diverse evolutionary predictions share a common structure described by the predictive scope, time scale and precision. Then, by using examples ranging from SARS‐CoV2 and influenza to CRISPR‐based gene drives and sustainable product formation in biotechnology, we discuss the methods for predicting evolution, the factors that affect predictability and how predictions can be used to prevent evolution in undesirable directions or to promote beneficial evolution (i.e. evolutionary control). We hope that this review will stimulate collaboration between fields by establishing a common language for evolutionary predictions.
Keywords