PLoS ONE (Jan 2018)

Efficient similarity-based data clustering by optimal object to cluster reallocation.

  • Mathias Rossignol,
  • Mathieu Lagrange,
  • Arshia Cont

DOI
https://doi.org/10.1371/journal.pone.0197450
Journal volume & issue
Vol. 13, no. 6
p. e0197450

Abstract

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We present an iterative flat hard clustering algorithm designed to operate on arbitrary similarity matrices, with the only constraint that these matrices be symmetrical. Although functionally very close to kernel k-means, our proposal performs a maximization of average intra-class similarity, instead of a squared distance minimization, in order to remain closer to the semantics of similarities. We show that this approach permits the relaxing of some conditions on usable affinity matrices like semi-positiveness, as well as opening possibilities for computational optimization required for large datasets. Systematic evaluation on a variety of data sets shows that compared with kernel k-means and the spectral clustering methods, the proposed approach gives equivalent or better performance, while running much faster. Most notably, it significantly reduces memory access, which makes it a good choice for large data collections. Material enabling the reproducibility of the results is made available online.