Insights from modelling sixteen years of climatic and fumonisin patterns in maize in South Africa

Abstract

Abstract Mycotoxin contamination of agricultural commodities is a global public health problem that has remained elusive to various mitigation approaches, particularly in developing countries. Climate change and its impact exacerbates South Africa’s vulnerability to mycotoxin contamination, and significantly threatens its’s food systems, public health, and agro-economic development. Herein we analyse sixteen years (2005/2006–2020/2021) of annual national meteorological data on South Africa which reveals both systematic and erratic variability in critical climatic factors known to influence mycotoxin contamination in crops. Within the same study period, data on fumonisin (FB) monitoring show clear climate-dependent trends. The strongest positive warming trend is observed between 2018/2019 and 2019/2020 (0.51 °C/year), and a strong positive correlation is likewise established between FB contamination and temperature (r ranging from 0.6 to 0.9). Four machine learning models, viz support vector machines, eXtreme gradient boosting, random forest, and orthogonal partial least squares, are generalized on the historical data with suitable performance (RMSE as low as 0.00). All the adopted models are able to predict future FB contamination patterns with reasonable precision (R2 ranging from 0.34 to 1.00). The most important model feature for predicting average FB contamination (YA) is the historical pattern of average FB contamination in maize within the region (ΣFBs_avg). The two most significant features in modelling maximum FB contamination (YM) are minimum temperature from the CMIP6 data (Pro_tempMIN) and observed precipitation from the CRU data (O_prep). Our study provides strong evidence of the impact of climate change on FB in South Africa and reiterates the significance of machine learning modelling in predicting mycotoxin contamination in light of changing climatic conditions, which could facilitate early warnings and the adoption of relevant mitigation measures that could help in mycotoxin risk management and control.

Keywords

• Mycotoxins
• Fumonisin
• Climate change
• Machine learning
• Predictive modelling