Nature Communications (Nov 2022)

Leveraging data-driven self-consistency for high-fidelity gene expression recovery

  • Md Tauhidul Islam,
  • Jen-Yeu Wang,
  • Hongyi Ren,
  • Xiaomeng Li,
  • Masoud Badiei Khuzani,
  • Shengtian Sang,
  • Lequan Yu,
  • Liyue Shen,
  • Wei Zhao,
  • Lei Xing

DOI
https://doi.org/10.1038/s41467-022-34595-w
Journal volume & issue
Vol. 13, no. 1
pp. 1 – 17

Abstract

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Recovering dropout-affected gene expression values is a challenging problem in bioinformatics. Here, the authors propose a data-driven framework, that first learns the underlying data distribution and then recovers the expression values by imposing a self-consistency on the expression matrix.