SMAP is a pipeline for sample matching in proteogenomics

Ling Li; Mingming Niu; Alyssa Erickson; Jie Luo; Kincaid Rowbotham; Kai Guo; He Huang; Yuxin Li; Yi Jiang; Junguk Hur; Chunyu Liu; Junmin Peng; Xusheng Wang

doi:10.1038/s41467-022-28411-8

Nature Communications (Feb 2022)

SMAP is a pipeline for sample matching in proteogenomics

Ling Li,
Mingming Niu,
Alyssa Erickson,
Jie Luo,
Kincaid Rowbotham,
Kai Guo,
He Huang,
Yuxin Li,
Yi Jiang,
Junguk Hur,
Chunyu Liu,
Junmin Peng,
Xusheng Wang

Affiliations

Ling Li: Department of Biology, University of North Dakota
Mingming Niu: Departments of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children’s Research Hospital
Alyssa Erickson: Department of Biology, University of North Dakota
Jie Luo: State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Zhejiang Academy of Agricultural Sciences
Kincaid Rowbotham: Department of Biology, University of North Dakota
Kai Guo: Department of Neurology, University of Michigan
He Huang: Department of Biology, University of North Dakota
Yuxin Li: Departments of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children’s Research Hospital
Yi Jiang: Department of Epidemiology and Biostatistics, School of Public Health, Tongji Medical College, Huazhong University of Science and Technology
Junguk Hur: Department of Biomedical Sciences, School of medicine and health sciences, University of North Dakota
Chunyu Liu: Department of Psychiatry, SUNY Upstate Medical University
Junmin Peng: Departments of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children’s Research Hospital
Xusheng Wang: Department of Biology, University of North Dakota

DOI: https://doi.org/10.1038/s41467-022-28411-8
Journal volume & issue: Vol. 13, no. 1
pp. 1 – 9

Abstract

Read online

Sample mix-up is a potential problem in large-scale omic studies due to the complexity of sample processing. Here, the authors present a pipeline for sample matching in proteogenomics to verify sample identity and ensure data integrity.

Published in Nature Communications

ISSN: 2041-1723 (Online)
Publisher: Nature Portfolio
Country of publisher: United Kingdom
LCC subjects: Science
Website: https://www.nature.com/ncomms/

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